KEGG   PATHWAY: pmaz00020
Entry
pmaz00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Pseudoalteromonas maricaloris DSM 15914
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pmaz00020  Citrate cycle (TCA cycle)
pmaz00020

Module
pmaz_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:pmaz00020]
pmaz_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:pmaz00020]
pmaz_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pmaz00020]
pmaz_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:pmaz00020]
pmaz_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pmaz00020]
Other DBs
GO: 0006099
Organism
Pseudoalteromonas maricaloris DSM 15914 [GN:pmaz]
Gene
R5H13_08660  citrate synthase [KO:K01647] [EC:2.3.3.1]
R5H13_22790  prpC; 2-methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
R5H13_01500  acnA; aconitate hydratase AcnA [KO:K27802] [EC:4.2.1.3 4.2.1.99]
R5H13_00815  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
R5H13_10330  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
R5H13_21240  isocitrate dehydrogenase [KO:K00030] [EC:1.1.1.41]
R5H13_08685  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
R5H13_08690  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
R5H13_03860  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
R5H13_21980  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
R5H13_08700  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
R5H13_08695  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
R5H13_08675  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
R5H13_08680  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
R5H13_08665  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
R5H13_08670  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
R5H13_06750  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
R5H13_00190  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
R5H13_14470  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
R5H13_17585  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
R5H13_03850  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
R5H13_03855  aceF; pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pmaz00010  Glycolysis / Gluconeogenesis
pmaz00053  Ascorbate and aldarate metabolism
pmaz00061  Fatty acid biosynthesis
pmaz00071  Fatty acid degradation
pmaz00190  Oxidative phosphorylation
pmaz00220  Arginine biosynthesis
pmaz00250  Alanine, aspartate and glutamate metabolism
pmaz00280  Valine, leucine and isoleucine degradation
pmaz00350  Tyrosine metabolism
pmaz00470  D-Amino acid metabolism
pmaz00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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