KEGG   PATHWAY: ppno00630
Entry
ppno00630                   Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Pandoraea pnomenusa RB38
Class
Metabolism; Carbohydrate metabolism
Pathway map
ppno00630  Glyoxylate and dicarboxylate metabolism
ppno00630

Module
ppno_M00012  Glyoxylate cycle [PATH:ppno00630]
ppno_M00621  Glycine cleavage system [PATH:ppno00630]
Other DBs
GO: 0046487 0043648
Organism
Pandoraea pnomenusa RB38 [GN:ppno]
Gene
DA70_05445  isocitrate lyase [KO:K01637] [EC:4.1.3.1 4.1.3.30]
DA70_11855  acetyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
DA70_08655  AMP-binding protein [KO:K01895] [EC:6.2.1.1]
DA70_02195  AMP-dependent synthetase [KO:K01895] [EC:6.2.1.1]
DA70_01485  AMP-dependent synthetase [KO:K01895] [EC:6.2.1.1]
DA70_15935  malate synthase G [KO:K01638] [EC:2.3.3.9]
DA70_05425  malate synthase A [KO:K01638] [EC:2.3.3.9]
DA70_06810  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
DA70_09265  citrate synthase [KO:K01647] [EC:2.3.3.1]
DA70_06775  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
DA70_04495  excisionase [KO:K01647] [EC:2.3.3.1]
DA70_01065  citrate synthase/methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
DA70_06820  acnA; aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
DA70_01410  aconitate hydratase B [KO:K01682] [EC:4.2.1.3 4.2.1.99]
DA70_14300  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
DA70_13310  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
DA70_15775  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
DA70_02800  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
DA70_02480  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
DA70_02455  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
DA70_22135  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
DA70_21980  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
DA70_03330  beta-ketoacyl-ACP reductase [KO:K00023] [EC:1.1.1.36]
DA70_02460  beta-ketoacyl-ACP reductase [KO:K00023] [EC:1.1.1.36]
DA70_20970  glycolate oxidase subunit GlcD [KO:K00104] [EC:1.1.99.14]
DA70_20365  glycolate oxidase subunit GlcD [KO:K00104] [EC:1.1.99.14]
DA70_20960  glcE; glycolate oxidase subunit GlcE [KO:K11472] [EC:1.1.99.14]
DA70_20360  glcE; glycolate oxidase subunit GlcE [KO:K11472] [EC:1.1.99.14]
DA70_20355  glcF; glycolate oxidase iron-sulfur subunit [KO:K11473] [EC:1.1.99.14]
DA70_14700  catalase [KO:K03781] [EC:1.11.1.6]
DA70_11940  catalase [KO:K03781] [EC:1.11.1.6]
DA70_19110  catalase [KO:K03781] [EC:1.11.1.6]
DA70_14400  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
DA70_00830  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
DA70_12190  D-glycerate dehydrogenase [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
DA70_20415  D-glycerate dehydrogenase [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
DA70_18820  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
DA70_20465  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
DA70_23550  serine--glyoxylate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
DA70_05980  glnA; glutamine synthetase [KO:K01915] [EC:6.3.1.2]
DA70_23890  glyA; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
DA70_17015  glycine dehydrogenase (aminomethyl-transferring) [KO:K00281] [EC:1.4.4.2]
DA70_17005  glycine cleavage system protein T [KO:K00605] [EC:2.1.2.10]
DA70_06275  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
DA70_02270  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
DA70_17010  glycine cleavage system protein H [KO:K02437]
DA70_05630  glyoxylate carboligase [KO:K01608] [EC:4.1.1.47]
DA70_05635  hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
DA70_05640  2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
DA70_10405  2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
DA70_01085  glycerate kinase [KO:K00865] [EC:2.7.1.165]
DA70_12830  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
DA70_12175  2-dehydro-3-deoxyphosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
DA70_12955  formate dehydrogenase [KO:K00122] [EC:1.17.1.9]
DA70_08490  formate dehydrogenase [KO:K00126] [EC:1.17.1.9]
DA70_04890  formate dehydrogenase [KO:K00126] [EC:1.17.1.9]
DA70_08315  sulfate ABC transporter substrate-binding protein [KO:K00123] [EC:1.17.1.9]
DA70_08310  formate dehydrogenase [KO:K00123] [EC:1.17.1.9]
DA70_08485  formate dehydrogenase [KO:K00123] [EC:1.17.1.9]
DA70_04900  formate dehydrogenase [KO:K00123] [EC:1.17.1.9]
DA70_08305  formate dehydrogenase subunit beta [KO:K00124]
DA70_08480  formate dehydrogenase [KO:K00124]
DA70_04905  formate dehydrogenase [KO:K00124]
DA70_08300  formate dehydrogenase [KO:K00127]
DA70_08475  formate dehydrogenase [KO:K00127]
DA70_04910  formate dehydrogenase [KO:K00127]
DA70_04010  esterase [KO:K01432] [EC:3.5.1.9]
DA70_23985  esterase [KO:K01432] [EC:3.5.1.9]
DA70_18375  hypothetical protein [KO:K01432] [EC:3.5.1.9]
DA70_23265  arylformamidase [KO:K07130] [EC:3.5.1.9]
DA70_13455  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
DA70_08450  oxalyl-CoA decarboxylase [KO:K01577] [EC:4.1.1.8]
DA70_08445  formyl-CoA transferase [KO:K07749] [EC:2.8.3.16]
DA70_08435  formyl-CoA transferase [KO:K07749] [EC:2.8.3.16]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
ppno00010  Glycolysis / Gluconeogenesis
ppno00020  Citrate cycle (TCA cycle)
ppno00030  Pentose phosphate pathway
ppno00053  Ascorbate and aldarate metabolism
ppno00071  Fatty acid degradation
ppno00230  Purine metabolism
ppno00250  Alanine, aspartate and glutamate metabolism
ppno00260  Glycine, serine and threonine metabolism
ppno00620  Pyruvate metabolism
ppno00710  Carbon fixation by Calvin cycle
ppno00750  Vitamin B6 metabolism
ppno00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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