KEGG   PATHWAY: prei03018
Entry
prei03018                   Pathway                                
Name
RNA degradation - Plasmodium reichenowi
Description
The correct processing, quality control and turnover of cellular RNA molecules are critical to many aspects in the expression of genetic information. In eukaryotes, two major pathways of mRNA decay exist and both pathways are initiated by poly(A) shortening of the mRNA. In the 5' to 3' pathway, this is followed by decapping which then permits the 5' to 3' exonucleolytic degradation of transcripts. In the 3' to 5' pathway, the exosome, a large multisubunit complex, plays a key role. The exosome exists in archaeal cells, too. In bacteria, endoribonuclease E, a key enzyme involved in RNA decay and processing, organizes a protein complex called degradosome. RNase E or R interacts with the phosphate-dependent exoribonuclease polynucleotide phosphorylase, DEAD-box helicases, and additional factors in the RNA-degrading complex.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
prei03018  RNA degradation
prei03018

Other DBs
GO: 0006401
Organism
Plasmodium reichenowi [GN:prei]
Gene
PRSY57_0717200  exosome complex component CSL4, putative [KO:K07573]
PRSY57_0407800  exosome complex component RRP4, putative [KO:K03679]
PRSY57_1306000  exosome complex component RRP40, putative [KO:K03681]
PRSY57_1339100  exosome complex component RRP42, putative [KO:K12589]
PRSY57_1427100  exosome complex exonuclease RRP41, putative [KO:K11600]
PRSY57_1363400  exosome complex component RRP45, putative [KO:K03678]
PRSY57_1358200  exosome complex exonuclease RRP44, putative [KO:K12585] [EC:3.1.13.-]
PRSY57_1444800  hypothetical protein [KO:K12592]
PRSY57_1331400  nucleotidyltransferase, putative [KO:K03514] [EC:2.7.7.19]
PRSY57_0600700  ATP-dependent RNA helicase, putative [KO:K12598] [EC:5.6.2.6]
PRSY57_0518600  carbon catabolite repressor protein 4, putative [KO:K12603] [EC:3.1.13.4]
PRSY57_1102300  CCR4-NOT transcription complex subunit 1, putative [KO:K12604]
PRSY57_1127100  CCR4-NOT transcription complex subunit 2, putative [KO:K12605]
PRSY57_0810600  CCR4-associated factor 1 [KO:K12581]
PRSY57_0506800  cell differentiation protein rcd1, putative [KO:K12606]
PRSY57_1433300  ABC transporter, putative [KO:K12608]
PRSY57_0820600  ATP-dependent RNA helicase prh1, putative [KO:K14442] [EC:5.6.2.6]
PRSY57_1442800  poly(A)-specific ribonuclease PARN, putative [KO:K01148] [EC:3.1.13.4]
PRSY57_1223600  polyadenylate-binding protein, putative [KO:K13126]
PRSY57_1307900  mRNA-decapping enzyme 2, putative [KO:K12613] [EC:3.6.1.62]
PRSY57_0320100  ATP-dependent RNA helicase DDX6, putative [KO:K12614] [EC:5.6.2.7]
PRSY57_1104800  exonuclease, putative [KO:K12618] [EC:3.1.13.-]
PRSY57_0907500  exoribonuclease, putative [KO:K12619] [EC:3.1.13.-]
PRSY57_1122800  U6 snRNA-associated Sm-like protein LSm1, putative [KO:K12620]
PRSY57_0519400  U6 snRNA-associated Sm-like protein LSm2, putative [KO:K12621]
PRSY57_0819200  U6 snRNA-associated Sm-like protein LSm3, putative [KO:K12622]
PRSY57_1105500  U6 snRNA-associated Sm-like protein LSm4, putative [KO:K12623]
PRSY57_1442600  U6 snRNA-associated Sm-like protein LSm5, putative [KO:K12624]
PRSY57_1324000  U6 snRNA-associated Sm-like protein LSm6, putative [KO:K12625]
PRSY57_1208500  U6 snRNA-associated Sm-like protein LSm7, putative [KO:K12626]
PRSY57_0828600  U6 snRNA-associated Sm-like protein LSm8, putative [KO:K12627]
PRSY57_1015300  enolase, putative [KO:K01689] [EC:4.2.1.11]
PRSY57_1132400  heat shock protein 70, putative [KO:K04043]
PRSY57_1015000  heat shock protein 60 [KO:K04077] [EC:5.6.1.7]
PRSY57_1231400  60 kDa chaperonin [KO:K04077] [EC:5.6.1.7]
Reference
  Authors
Houseley J, Tollervey D
  Title
The many pathways of RNA degradation.
  Journal
Cell 136:763-76 (2009)
DOI:10.1016/j.cell.2009.01.019
Reference
  Authors
Buttner K, Wenig K, Hopfner KP
  Title
The exosome: a macromolecular cage for controlled RNA degradation.
  Journal
Mol Microbiol 61:1372-9 (2006)
DOI:10.1111/j.1365-2958.2006.05331.x
Reference
  Authors
Schilders G, van Dijk E, Raijmakers R, Pruijn GJ
  Title
Cell and molecular biology of the exosome: how to make or break an RNA.
  Journal
Int Rev Cytol 251:159-208 (2006)
DOI:10.1016/S0074-7696(06)51005-8
Reference
  Authors
Hartung S, Hopfner KP
  Title
The exosome, plugged.
  Journal
EMBO Rep 8:456-7 (2007)
DOI:10.1038/sj.embor.7400961
Reference
  Authors
Carpousis AJ
  Title
The RNA degradosome of Escherichia coli: an mRNA-degrading machine assembled on RNase E.
  Journal
Annu Rev Microbiol 61:71-87 (2007)
DOI:10.1146/annurev.micro.61.080706.093440
Reference
  Authors
Marcaida MJ, DePristo MA, Chandran V, Carpousis AJ, Luisi BF
  Title
The RNA degradosome: life in the fast lane of adaptive molecular evolution.
  Journal
Trends Biochem Sci 31:359-65 (2006)
DOI:10.1016/j.tibs.2006.05.005
Reference
  Authors
Condon C
  Title
Maturation and degradation of RNA in bacteria.
  Journal
Curr Opin Microbiol 10:271-8 (2007)
DOI:10.1016/j.mib.2007.05.008
Related
pathway
prei03015  mRNA surveillance pathway
KO pathway
ko03018   
LinkDB

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