KEGG   PATHWAY: psjy00020
Entry
psjy00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Pseudomonas sp. JY-Q
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
psjy00020  Citrate cycle (TCA cycle)
psjy00020

Module
psjy_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:psjy00020]
psjy_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:psjy00020]
psjy_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:psjy00020]
psjy_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:psjy00020]
psjy_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:psjy00020]
Other DBs
GO: 0006099
Organism
Pseudomonas sp. JY-Q [GN:psjy]
Gene
AA098_19220  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
AA098_10040  methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
AA098_09015  aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
AA098_10060  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
AA098_18240  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
AA098_18245  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
AA098_19195  2-oxoglutarate dehydrogenase [KO:K00164] [EC:1.2.4.2]
AA098_19190  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
AA098_19185  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
AA098_20080  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
AA098_00150  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
AA098_19175  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
AA098_19180  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
AA098_26890  acetyl-CoA hydrolase [KO:K18118] [EC:2.8.3.18]
AA098_19205  sdhA; succinate dehydrogenase [KO:K00239] [EC:1.3.5.1]
AA098_19200  sdhB; succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
AA098_19215  succinate dehydrogenase [KO:K00241]
AA098_19210  succinate dehydrogenase [KO:K00242]
AA098_22950  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
AA098_22700  aspA; aspartate ammonia-lyase [KO:K01679] [EC:4.2.1.2]
AA098_07420  fumarate hydratase [KO:K01679] [EC:4.2.1.2]
AA098_24115  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
AA098_20845  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
AA098_23685  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
AA098_00240  pyruvate carboxylase subunit A [KO:K01959] [EC:6.4.1.1]
AA098_00245  pyruvate carboxylase subunit B [KO:K01960] [EC:6.4.1.1]
AA098_26365  phosphoenolpyruvate carboxykinase [ATP] [KO:K01610] [EC:4.1.1.49]
AA098_25890  aceE; pyruvate dehydrogenase [KO:K00163] [EC:1.2.4.1]
AA098_24645  acetoin dehydrogenase [KO:K00627] [EC:2.3.1.12]
AA098_25895  dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
psjy00010  Glycolysis / Gluconeogenesis
psjy00053  Ascorbate and aldarate metabolism
psjy00061  Fatty acid biosynthesis
psjy00071  Fatty acid degradation
psjy00190  Oxidative phosphorylation
psjy00220  Arginine biosynthesis
psjy00250  Alanine, aspartate and glutamate metabolism
psjy00280  Valine, leucine and isoleucine degradation
psjy00350  Tyrosine metabolism
psjy00470  D-Amino acid metabolism
psjy00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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