KEGG   PATHWAY: psv00020
Entry
psv00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Pseudomonas sp. VLB120
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
psv00020  Citrate cycle (TCA cycle)
psv00020

Module
psv_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:psv00020]
psv_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:psv00020]
psv_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:psv00020]
psv_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:psv00020]
psv_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:psv00020]
Other DBs
GO: 0006099
Organism
Pseudomonas sp. VLB120 [GN:psv]
Gene
PVLB_16320  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
PVLB_08385  methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
PVLB_07775  acnA; aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
PVLB_08405  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
PVLB_14970  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
PVLB_14975  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
PVLB_16295  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
PVLB_16290  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
PVLB_16285  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
PVLB_25430  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
PVLB_17465  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
PVLB_16275  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
PVLB_16280  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
PVLB_00875  succinate CoA transferase [KO:K18118] [EC:2.8.3.18]
PVLB_16305  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
PVLB_16300  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
PVLB_16315  succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
PVLB_16310  succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
PVLB_04810  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
PVLB_06440  fumarate hydratase [KO:K01679] [EC:4.2.1.2]
PVLB_20385  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
PVLB_10715  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
PVLB_07810  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
PVLB_21325  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
PVLB_18530  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
PVLB_25330  pyruvate carboxylase subunit A [KO:K01959] [EC:6.4.1.1]
PVLB_25325  pyruvate carboxylase subunit B [KO:K01960] [EC:6.4.1.1]
PVLB_24300  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
PVLB_23550  aceE; pyruvate dehydrogenase subunit E1 [KO:K00163] [EC:1.2.4.1]
PVLB_23555  dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
PVLB_22255  acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
psv00010  Glycolysis / Gluconeogenesis
psv00053  Ascorbate and aldarate metabolism
psv00061  Fatty acid biosynthesis
psv00071  Fatty acid degradation
psv00190  Oxidative phosphorylation
psv00220  Arginine biosynthesis
psv00250  Alanine, aspartate and glutamate metabolism
psv00280  Valine, leucine and isoleucine degradation
psv00350  Tyrosine metabolism
psv00470  D-Amino acid metabolism
psv00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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