KEGG   PATHWAY: pys00010
Entry
pys00010                    Pathway                                
Name
Glycolysis / Gluconeogenesis - Pyrococcus sp. ST04
Description
Glycolysis is the process of converting glucose into pyruvate and generating small amounts of ATP (energy) and NADH (reducing power). It is a central pathway that produces important precursor metabolites: six-carbon compounds of glucose-6P and fructose-6P and three-carbon compounds of glycerone-P, glyceraldehyde-3P, glycerate-3P, phosphoenolpyruvate, and pyruvate [MD:M00001]. Acetyl-CoA, another important precursor metabolite, is produced by oxidative decarboxylation of pyruvate [MD:M00307]. When the enzyme genes of this pathway are examined in completely sequenced genomes, the reaction steps of three-carbon compounds from glycerone-P to pyruvate form a conserved core module [MD:M00002], which is found in almost all organisms and which sometimes contains operon structures in bacterial genomes. Gluconeogenesis is a synthesis pathway of glucose from noncarbohydrate precursors. It is essentially a reversal of glycolysis with minor variations of alternative paths [MD:M00003].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pys00010  Glycolysis / Gluconeogenesis
pys00010

Module
pys_M00001  Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH:pys00010]
pys_M00002  Glycolysis, core module involving three-carbon compounds [PATH:pys00010]
pys_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:pys00010]
pys_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pys00010]
Other DBs
GO: 0006096 0006094
Organism
Pyrococcus sp. ST04 [GN:pys]
Gene
Py04_0350  glucose-6-phosphate isomerase [KO:K06859] [EC:5.3.1.9]
Py04_0618  ADP-dependent glucokinase [KO:K00918] [EC:2.7.1.146 2.7.1.147]
Py04_1537  ADP-specific phosphofructokinase [KO:K00918] [EC:2.7.1.146 2.7.1.147]
Py04_0181  fructose 1,6-bisphosphate aldolase [KO:K11645] [EC:4.1.2.13]
Py04_0719  putative fructose-1,6-bisphosphatase [KO:K01622] [EC:4.1.2.13 3.1.3.11]
Py04_0018  putative triosephosphate isomerase [KO:K01803] [EC:5.3.1.1]
Py04_1761  glyceraldehyde-3-phosphate dehydrogenase [KO:K00150] [EC:1.2.1.59]
Py04_1009  phosphoglycerate kinase [KO:K00927] [EC:2.7.2.3]
Py04_0108  cofactor-independent phosphoglycerate mutase [KO:K15635] [EC:5.4.2.12]
Py04_0371  phosphopyruvate hydratase [KO:K01689] [EC:4.2.1.11]
Py04_1522  putative eno-like enolase [KO:K01689] [EC:4.2.1.11]
Py04_1124  pyruvate kinase [KO:K00873] [EC:2.7.1.40]
Py04_0173  phosphoenolpyruvate synthase [KO:K01007] [EC:2.7.9.2]
Py04_1077  pyruvate ferredoxin oxidoreductase subunit alpha [KO:K00169] [EC:1.2.7.1]
Py04_1076  pyruvate ferredoxin oxidoreductase subunit beta [KO:K00170] [EC:1.2.7.1]
Py04_1082  pyruvate/ketoisovalerate ferredoxin oxidoreductase subunit gamma [KO:K00189] [EC:1.2.7.7 1.2.7.1]
Py04_1078  pyuvate ferredoxin oxidoreductase subunit delta [KO:K00171] [EC:1.2.7.1]
Py04_1551  2-oxoglutarate ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Py04_1554  2-oxoglutarate ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Py04_1550  2-oxoglutarate ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Py04_1553  2-oxoglutarate ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Py04_1410  ADP forming acetyl coenzyme A synthetase [KO:K01905] [EC:6.2.1.13]
Py04_0710  hypothetical protein [KO:K01905] [EC:6.2.1.13]
Py04_1720  putative succinyl-coA synthetase subunit alpha-like protein [KO:K01905] [EC:6.2.1.13]
Py04_0387  putative succinyl-coA synthetase alpha subunit related protein [KO:K01905] [EC:6.2.1.13]
Py04_1719  putative acetyl-CoA synthetase subunit beta [KO:K22224] [EC:6.2.1.13]
Py04_1668  acetyl-CoA synthetase I subunit beta [KO:K22224] [EC:6.2.1.13]
Py04_0858  phospho-sugar mutase [KO:K15778] [EC:5.4.2.8 5.4.2.2]
Py04_0640  glyceraldehyde-3-phosphate: ferredoxin oxidoreductase [KO:K11389] [EC:1.2.7.6]
Py04_0438  phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00031  D-Glucose
C00033  Acetate
C00036  Oxaloacetate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00084  Acetaldehyde
C00085  D-Fructose 6-phosphate
C00103  D-Glucose 1-phosphate
C00111  Glycerone phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00186  (S)-Lactate
C00197  3-Phospho-D-glycerate
C00221  beta-D-Glucose
C00236  3-Phospho-D-glyceroyl phosphate
C00267  alpha-D-Glucose
C00354  D-Fructose 1,6-bisphosphate
C00469  Ethanol
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C01159  2,3-Bisphospho-D-glycerate
C01172  beta-D-Glucose 6-phosphate
C01451  Salicin
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C06186  Arbutin
C06187  Arbutin 6-phosphate
C06188  Salicin 6-phosphate
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pys00020  Citrate cycle (TCA cycle)
pys00030  Pentose phosphate pathway
pys00500  Starch and sucrose metabolism
pys00620  Pyruvate metabolism
pys00640  Propanoate metabolism
pys00710  Carbon fixation by Calvin cycle
KO pathway
ko00010   
LinkDB

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