KEGG   PATHWAY: pza00020
Entry
pza00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Pseudomonas zarinae
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pza00020  Citrate cycle (TCA cycle)
pza00020

Module
pza_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:pza00020]
pza_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:pza00020]
pza_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pza00020]
pza_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:pza00020]
pza_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pza00020]
Other DBs
GO: 0006099
Organism
Pseudomonas zarinae [GN:pza]
Gene
HU749_021850  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
HU749_010460  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
HU749_017775  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
HU749_018960  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
HU749_018965  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
HU749_021825  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
HU749_021820  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
HU749_000720  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
HU749_018165  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
HU749_021815  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
HU749_021805  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
HU749_021810  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
HU749_001650  acetyl-CoA hydrolase/transferase family protein [KO:K18118] [EC:2.8.3.18]
HU749_021835  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
HU749_021830  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
HU749_021845  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
HU749_021840  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
HU749_023655  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
HU749_005505  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
HU749_009270  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
HU749_015450  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
HU749_024935  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
HU749_000575  acetyl-CoA carboxylase biotin carboxylase subunit [KO:K01959] [EC:6.4.1.1]
HU749_000570  oadA; sodium-extruding oxaloacetate decarboxylase subunit alpha [KO:K01960] [EC:6.4.1.1]
HU749_002380  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
HU749_003475  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
HU749_012580  mdeB; alpha-ketoglutarate dehydrogenase [KO:K00163] [EC:1.2.4.1]
HU749_003470  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
HU749_017285  acetoin dehydrogenase dihydrolipoyllysine-residue acetyltransferase subunit [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pza00010  Glycolysis / Gluconeogenesis
pza00053  Ascorbate and aldarate metabolism
pza00061  Fatty acid biosynthesis
pza00071  Fatty acid degradation
pza00190  Oxidative phosphorylation
pza00220  Arginine biosynthesis
pza00250  Alanine, aspartate and glutamate metabolism
pza00280  Valine, leucine and isoleucine degradation
pza00350  Tyrosine metabolism
pza00470  D-Amino acid metabolism
pza00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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