KEGG   PATHWAY: rbq00270
Entry
rbq00270                    Pathway                                
Name
Cysteine and methionine metabolism - Rhizobium binae
Description
Cysteine and methionine are sulfur-containing amino acids. Cysteine is synthesized from serine through different pathways in different organism groups. In bacteria and plants, cysteine is converted from serine (via acetylserine) by transfer of hydrogen sulfide [MD:M00021]. In animals, methionine-derived homocysteine is used as sulfur source and its condensation product with serine (cystathionine) is converted to cysteine [MD:M00338]. Cysteine is metabolized to pyruvate in multiple routes. Methionine is an essential amino acid, which animals cannot synthesize. In bacteria and plants, methionine is synthesized from aspartate [MD:M00017]. S-Adenosylmethionine (SAM), synthesized from methionine and ATP, is a methyl group donor in many important transfer reactions including DNA methylation for regulation of gene expression. SAM may also be used to regenerate methionine in the methionine salvage pathway [MD:M00034].
Class
Metabolism; Amino acid metabolism
Pathway map
rbq00270  Cysteine and methionine metabolism
rbq00270

Module
rbq_M00021  Cysteine biosynthesis, serine => cysteine [PATH:rbq00270]
Other DBs
GO: 0006534 0006555
Organism
Rhizobium binae [GN:rbq]
Gene
J2J99_09890  cysE; serine O-acetyltransferase [KO:K00640] [EC:2.3.1.30]
J2J99_19240  cysE; serine O-acetyltransferase [KO:K00640] [EC:2.3.1.30]
J2J99_01830  cysK; cysteine synthase A [KO:K01738] [EC:2.5.1.47]
J2J99_09205  cysteine synthase A [KO:K01738] [EC:2.5.1.47]
J2J99_09870  cystathionine beta-lyase [KO:K01760] [EC:4.4.1.13]
J2J99_15290  metH; methionine synthase [KO:K00548] [EC:2.1.1.13]
J2J99_02065  methionine adenosyltransferase [KO:K00789] [EC:2.5.1.6]
J2J99_15370  N-acyl-L-homoserine lactone (AHL) synthase [KO:K20248] [EC:2.3.1.184]
J2J99_30165  GNAT family N-acetyltransferase [KO:K20249] [EC:2.3.1.184]
J2J99_32255  GNAT family N-acetyltransferase [KO:K20249] [EC:2.3.1.184]
J2J99_30635  GNAT family N-acetyltransferase [KO:K22955] [EC:2.3.1.184]
J2J99_31245  GNAT family N-acetyltransferase [KO:K22955] [EC:2.3.1.184]
J2J99_01695  5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase [KO:K01243] [EC:3.2.2.9]
J2J99_15840  pgeF; peptidoglycan editing factor PgeF [KO:K05810] [EC:2.4.2.1 2.4.2.28 3.5.4.4]
J2J99_24155  aspartate/tyrosine/aromatic aminotransferase [KO:K00832] [EC:2.6.1.57]
J2J99_23130  cystathionine gamma-synthase family protein [KO:K01761] [EC:4.4.1.11]
J2J99_00160  adenosylhomocysteinase [KO:K01251] [EC:3.13.2.1]
J2J99_19920  aspartate kinase [KO:K00928] [EC:2.7.2.4]
J2J99_29790  uridylate kinase [KO:K00928] [EC:2.7.2.4]
J2J99_21840  aspartate-semialdehyde dehydrogenase [KO:K00133] [EC:1.2.1.11]
J2J99_29795  aspartate-semialdehyde dehydrogenase [KO:K00133] [EC:1.2.1.11]
J2J99_09735  homoserine dehydrogenase [KO:K00003] [EC:1.1.1.3]
J2J99_21495  homoserine O-succinyltransferase [KO:K00651] [EC:2.3.1.46 2.3.1.31]
J2J99_08110  O-acetylhomoserine aminocarboxypropyltransferase [KO:K01740] [EC:2.5.1.49]
J2J99_29545  O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase [KO:K01740] [EC:2.5.1.49]
J2J99_02755  O-succinylhomoserine sulfhydrylase [KO:K10764] [EC:2.5.1.-]
J2J99_06320  branched-chain amino acid aminotransferase [KO:K00826] [EC:2.6.1.42]
J2J99_14435  branched-chain amino acid aminotransferase [KO:K00826] [EC:2.6.1.42]
J2J99_04235  glutamate--cysteine ligase [KO:K01919] [EC:6.3.2.2]
J2J99_01815  gshB; glutathione synthase [KO:K01920] [EC:6.3.2.3]
J2J99_30040  aspartate transaminase [KO:K00812] [EC:2.6.1.1]
J2J99_15725  pyridoxal phosphate-dependent aminotransferase [KO:K00812] [EC:2.6.1.1]
J2J99_26715  pyridoxal phosphate-dependent aminotransferase [KO:K00812] [EC:2.6.1.1]
J2J99_09195  sseA; 3-mercaptopyruvate sulfurtransferase [KO:K01011] [EC:2.8.1.1 2.8.1.2]
J2J99_20645  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
J2J99_11570  L-serine ammonia-lyase [KO:K01752] [EC:4.3.1.17]
J2J99_21815  pyridoxal-phosphate dependent enzyme [KO:K17989] [EC:4.3.1.17 4.3.1.19]
J2J99_18305  phosphoglycerate dehydrogenase [KO:K00058] [EC:1.1.1.95 1.1.1.399]
J2J99_25340  hydroxyacid dehydrogenase [KO:K00058] [EC:1.1.1.95 1.1.1.399]
J2J99_18310  phosphoserine transaminase [KO:K00831] [EC:2.6.1.52]
Compound
C00019  S-Adenosyl-L-methionine
C00021  S-Adenosyl-L-homocysteine
C00022  Pyruvate
C00041  L-Alanine
C00049  L-Aspartate
C00051  Glutathione
C00059  Sulfate
C00065  L-Serine
C00073  L-Methionine
C00094  Sulfite
C00097  L-Cysteine
C00109  2-Oxobutanoate
C00155  L-Homocysteine
C00170  5'-Methylthioadenosine
C00197  3-Phospho-D-glycerate
C00263  L-Homoserine
C00283  Hydrogen sulfide
C00409  Methanethiol
C00441  L-Aspartate 4-semialdehyde
C00491  L-Cystine
C00506  L-Cysteate
C00606  3-Sulfino-L-alanine
C00793  D-Cysteine
C00957  Mercaptopyruvate
C00979  O-Acetyl-L-serine
C01005  O-Phospho-L-serine
C01077  O-Acetyl-L-homoserine
C01118  O-Succinyl-L-homoserine
C01137  S-Adenosylmethioninamine
C01180  4-Methylthio-2-oxobutanoic acid
C01234  1-Aminocyclopropane-1-carboxylate
C01817  L-Homocystine
C01962  Thiocysteine
C02218  Dehydroalanine
C02291  L-Cystathionine
C02356  (S)-2-Aminobutanoate
C02989  L-Methionine S-oxide
C03082  4-Phospho-L-aspartate
C03089  5-Methylthio-D-ribose
C03145  N-Formylmethionine
C03232  3-Phosphonooxypyruvate
C03431  S-Inosyl-L-homocysteine
C03539  S-Ribosyl-L-homocysteine
C04188  S-Methyl-5-thio-D-ribose 1-phosphate
C04582  S-Methyl-5-thio-D-ribulose 1-phosphate
C05324  Nicotianamine
C05524  Aminoacyl-L-methionine
C05526  S-Glutathionyl-L-cysteine
C05527  3-Sulfinylpyruvate
C05528  3-Sulfopyruvate
C05823  3-Mercaptolactate
C05824  S-Sulfo-L-cysteine
C06547  Ethylene
C08276  3-(Methylthio)propanoate
C09306  Sulfur dioxide
C11437  1-Deoxy-D-xylulose 5-phosphate
C11481  HSO3-
C11499  (S)-3-Sulfolactate
C11537  (2R)-3-Sulfolactate
C15606  1,2-Dihydroxy-5-(methylthio)pent-1-en-3-one
C15650  2,3-Diketo-5-methylthiopentyl-1-phosphate
C15651  2-Hydroxy-3-keto-5-methylthiopentenyl-1-phosphate
C18049  N-Acyl-L-homoserine lactone
C19787  5'-S-Methyl-5'-thioinosine
C21015  gamma-L-Glutamyl-L-2-aminobutyrate
C21016  Ophthalmate
C22359  S-Methyl-1-thio-D-xylulose 5-phosphate
Reference
  Authors
Sekowska A, Denervaud V, Ashida H, Michoud K, Haas D, Yokota A, Danchin A
  Title
Bacterial variations on the methionine salvage pathway.
  Journal
BMC Microbiol 4:9 (2004)
DOI:10.1186/1471-2180-4-9
Reference
  Authors
Ashida H, Saito Y, Kojima C, Kobayashi K, Ogasawara N, Yokota A.
  Title
A functional link between RuBisCO-like protein of Bacillus and photosynthetic RuBisCO.
  Journal
Science 302:286-90 (2003)
DOI:10.1126/science.1086997
Reference
  Authors
Sekowska A, Danchin A.
  Title
The methionine salvage pathway in Bacillus subtilis.
  Journal
BMC Microbiol 2:8 (2002)
DOI:10.1186/1471-2180-2-8
Reference
  Authors
Berger BJ, English S, Chan G, Knodel MH.
  Title
Methionine regeneration and aminotransferases in Bacillus subtilis, Bacillus cereus, and Bacillus anthracis.
  Journal
J Bacteriol 185:2418-31 (2003)
DOI:10.1128/JB.185.8.2418-2431.2003
Reference
  Authors
Goyer A, Collakova E, Shachar-Hill Y, Hanson AD
  Title
Functional characterization of a methionine gamma-lyase in Arabidopsis and its implication in an alternative to the reverse trans-sulfuration pathway.
  Journal
Plant Cell Physiol 48:232-42 (2007)
DOI:10.1093/pcp/pcl055
Reference
  Authors
Rebeille F, Jabrin S, Bligny R, Loizeau K, Gambonnet B, Van Wilder V, Douce R, Ravanel S
  Title
Methionine catabolism in Arabidopsis cells is initiated by a gamma-cleavage process and leads to S-methylcysteine and isoleucine syntheses.
  Journal
Proc Natl Acad Sci U S A 103:15687-92 (2006)
DOI:10.1073/pnas.0606195103
Reference
  Authors
Pirkov I, Norbeck J, Gustafsson L, Albers E
  Title
A complete inventory of all enzymes in the eukaryotic methionine salvage pathway.
  Journal
FEBS J 275:4111-20 (2008)
DOI:10.1111/j.1742-4658.2008.06552.x
Reference
  Authors
Ashida H, Saito Y, Kojima C, Yokota A
  Title
Enzymatic characterization of 5-methylthioribulose-1-phosphate dehydratase of the methionine salvage pathway in Bacillus subtilis.
  Journal
Biosci Biotechnol Biochem 72:959-67 (2008)
DOI:10.1271/bbb.70651
Reference
  Authors
Kitabatake M, So MW, Tumbula DL, Soll D
  Title
Cysteine biosynthesis pathway in the archaeon Methanosarcina barkeri encoded by acquired bacterial genes?
  Journal
J Bacteriol 182:143-5 (2000)
DOI:10.1128/JB.182.1.143-145.2000
Reference
  Authors
Mino K, Ishikawa K
  Title
Characterization of a novel thermostable O-acetylserine sulfhydrylase from Aeropyrum pernix K1.
  Journal
J Bacteriol 185:2277-84 (2003)
DOI:10.1128/JB.185.7.2277-2284.2003
Reference
  Authors
Tanabe S
  Title
Development of assay methods for endogenous inorganic sulfur compounds and sulfurtransferases and evaluation of the physiological functions of bound sulfur.
  Journal
Yakugaku Zasshi 128:881-900 (2008)
DOI:10.1248/yakushi.128.881
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Gutierrez JA, Crowder T, Rinaldo-Matthis A, Ho MC, Almo SC, Schramm VL
  Title
Transition state analogs of 5'-methylthioadenosine nucleosidase disrupt quorum sensing.
  Journal
Nat Chem Biol 5:251-7 (2009)
DOI:10.1038/nchembio.153
Related
pathway
rbq00010  Glycolysis / Gluconeogenesis
rbq00250  Alanine, aspartate and glutamate metabolism
rbq00260  Glycine, serine and threonine metabolism
rbq00290  Valine, leucine and isoleucine biosynthesis
rbq00430  Taurine and hypotaurine metabolism
rbq00480  Glutathione metabolism
rbq00620  Pyruvate metabolism
rbq00640  Propanoate metabolism
rbq00770  Pantothenate and CoA biosynthesis
rbq00900  Terpenoid backbone biosynthesis
rbq00920  Sulfur metabolism
KO pathway
ko00270   
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