KEGG   PATHWAY: rhm00630
Entry
rhm00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Rhodovulum sp. MB263
Class
Metabolism; Carbohydrate metabolism
Pathway map
rhm00630  Glyoxylate and dicarboxylate metabolism
rhm00630

Module
rhm_M00373  Ethylmalonyl pathway [PATH:rhm00630]
rhm_M00621  Glycine cleavage system [PATH:rhm00630]
rhm_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:rhm00630]
Other DBs
GO: 0046487 0043648
Organism
Rhodovulum sp. MB263 [GN:rhm]
Gene
B5V46_02365  acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
B5V46_18390  AMP-binding protein [KO:K01895] [EC:6.2.1.1]
B5V46_05290  acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
B5V46_04400  malate synthase G [KO:K01638] [EC:2.3.3.9]
B5V46_04460  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
B5V46_07495  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
B5V46_05600  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
B5V46_11965  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
B5V46_12545  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
B5V46_17425  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
B5V46_18150  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
B5V46_18380  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
B5V46_11970  beta-ketoacyl-ACP reductase [KO:K00023] [EC:1.1.1.36]
B5V46_02940  (R)-hydratase [KO:K17865] [EC:4.2.1.55]
B5V46_17000  acyl dehydratase [KO:K17865] [EC:4.2.1.55]
B5V46_16995  hypothetical protein [KO:K17865] [EC:4.2.1.55]
B5V46_04550  crotonyl-CoA carboxylase/reductase [KO:K14446] [EC:1.3.1.85]
B5V46_12140  methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
B5V46_04545  protein meaA [KO:K14447] [EC:5.4.99.63]
B5V46_13600  acyl-CoA dehydrogenase [KO:K14448] [EC:1.3.8.12]
B5V46_04490  hypothetical protein [KO:K14449] [EC:4.2.1.148]
B5V46_11900  CoA ester lyase [KO:K08691] [EC:4.1.3.24 4.1.3.25]
B5V46_04475  CoA ester lyase [KO:K14451] [EC:3.1.2.30]
B5V46_08760  acetyl/propionyl-CoA carboxylase subunit alpha [KO:K01965] [EC:6.4.1.3]
B5V46_08735  methylmalonyl-CoA carboxyltransferase [KO:K01966] [EC:6.4.1.3 2.1.3.15]
B5V46_08775  methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
B5V46_14015  FAD-binding oxidoreductase [KO:K00104] [EC:1.1.99.14]
B5V46_14010  2-hydroxy-acid oxidase [KO:K11472] [EC:1.1.99.14]
B5V46_14005  glycolate oxidase iron-sulfur subunit [KO:K11473] [EC:1.1.99.14]
B5V46_04735  D-glycerate dehydrogenase [KO:K00015] [EC:1.1.1.26]
B5V46_03840  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
B5V46_06395  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
B5V46_16080  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
B5V46_11080  phosphatase [KO:K01091] [EC:3.1.3.18]
B5V46_12330  haloacid dehalogenase [KO:K01091] [EC:3.1.3.18]
B5V46_06415  ribulose 1,5-bisphosphate carboxylase [KO:K01601] [EC:4.1.1.39]
B5V46_03690  rbcL; ribulose-bisphosphate carboxylase large subunit [KO:K01601] [EC:4.1.1.39]
B5V46_03685  ribulose bisphosphate carboxylase small subunit [KO:K01602] [EC:4.1.1.39]
B5V46_15395  serine--glyoxylate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
B5V46_05635  type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
B5V46_15795  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
B5V46_15805  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
B5V46_12620  glyA; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
B5V46_13040  glycine dehydrogenase (aminomethyl-transferring) [KO:K00281] [EC:1.4.4.2]
B5V46_13050  gcvT; glycine cleavage system protein T [KO:K00605] [EC:2.1.2.10]
B5V46_10055  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
B5V46_14600  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
B5V46_13045  glycine cleavage system protein H [KO:K02437]
B5V46_15320  glycerate kinase [KO:K11529] [EC:2.7.1.165]
B5V46_08170  keto-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
B5V46_06495  formate dehydrogenase [KO:K00126] [EC:1.17.1.9]
B5V46_06505  formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
B5V46_06510  formate dehydrogenase [KO:K00124]
B5V46_06515  formate dehydrogenase subunit gamma [KO:K00127]
B5V46_13975  alpha/beta hydrolase [KO:K01432] [EC:3.5.1.9]
B5V46_04980  formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
B5V46_15245  acetamidase [KO:K01455] [EC:3.5.1.49]
B5V46_12435  N-formylglutamate deformylase [KO:K01458] [EC:3.5.1.68]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
rhm00010  Glycolysis / Gluconeogenesis
rhm00020  Citrate cycle (TCA cycle)
rhm00030  Pentose phosphate pathway
rhm00053  Ascorbate and aldarate metabolism
rhm00071  Fatty acid degradation
rhm00230  Purine metabolism
rhm00250  Alanine, aspartate and glutamate metabolism
rhm00260  Glycine, serine and threonine metabolism
rhm00620  Pyruvate metabolism
rhm00710  Carbon fixation by Calvin cycle
rhm00750  Vitamin B6 metabolism
rhm00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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