KEGG   PATHWAY: rhp00630
Entry
rhp00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Rhodobacter xanthinilyticus
Class
Metabolism; Carbohydrate metabolism
Pathway map
rhp00630  Glyoxylate and dicarboxylate metabolism
rhp00630

Module
rhp_M00373  Ethylmalonyl pathway [PATH:rhp00630]
rhp_M00621  Glycine cleavage system [PATH:rhp00630]
rhp_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:rhp00630]
Other DBs
GO: 0046487 0043648
Organism
Rhodobacter xanthinilyticus [GN:rhp]
Gene
LPB142_11705  acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
LPB142_15305  AMP-dependent synthetase [KO:K01895] [EC:6.2.1.1]
LPB142_10985  malate synthase G [KO:K01638] [EC:2.3.3.9]
LPB142_03405  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
LPB142_06580  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
LPB142_10465  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
LPB142_02910  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
LPB142_03755  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
LPB142_09745  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
LPB142_14335  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
LPB142_02905  beta-ketoacyl-ACP reductase [KO:K00023] [EC:1.1.1.36]
LPB142_05240  (R)-hydratase [KO:K17865] [EC:4.2.1.55]
LPB142_14610  crotonyl-CoA carboxylase/reductase [KO:K14446] [EC:1.3.1.85]
LPB142_03970  methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
LPB142_14600  protein meaA [KO:K14447] [EC:5.4.99.63]
LPB142_14090  acyl-CoA dehydrogenase [KO:K14448] [EC:1.3.8.12]
LPB142_03430  hypothetical protein [KO:K14449] [EC:4.2.1.148]
LPB142_02980  CoA ester lyase [KO:K08691] [EC:4.1.3.24 4.1.3.25]
LPB142_03415  CoA ester lyase [KO:K14451] [EC:3.1.2.30]
LPB142_06230  acetyl/propionyl-CoA carboxylase subuit alpha [KO:K01965] [EC:6.4.1.3]
LPB142_06210  methylmalonyl-CoA carboxyltransferase [KO:K01966] [EC:6.4.1.3 2.1.3.15]
LPB142_06240  methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
LPB142_15010  FAD-binding oxidoreductase [KO:K00104] [EC:1.1.99.14]
LPB142_15005  2-hydroxy-acid oxidase [KO:K11472] [EC:1.1.99.14]
LPB142_15000  2-hydroxy-acid oxidase [KO:K11473] [EC:1.1.99.14]
LPB142_03910  D-glycerate dehydrogenase [KO:K00015] [EC:1.1.1.26]
LPB142_04470  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
LPB142_13705  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
LPB142_09290  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
LPB142_11765  phosphatase [KO:K01091] [EC:3.1.3.18]
LPB142_10960  haloacid dehalogenase [KO:K01091] [EC:3.1.3.18]
LPB142_15230  septum site-determining protein [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
LPB142_02555  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
LPB142_07895  type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
LPB142_12285  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
LPB142_13090  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
LPB142_13100  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
LPB142_03670  glyA; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
LPB142_04555  glycine dehydrogenase (aminomethyl-transferring) [KO:K00281] [EC:1.4.4.2]
LPB142_04545  gcvT; glycine cleavage system protein T [KO:K00605] [EC:2.1.2.10]
LPB142_05600  aminomethyltransferase [KO:K00605] [EC:2.1.2.10]
LPB142_05615  aminomethyltransferase [KO:K00605] [EC:2.1.2.10]
LPB142_03360  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
LPB142_10590  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
LPB142_04550  glycine cleavage system protein H [KO:K02437]
LPB142_11645  glycerate kinase [KO:K11529] [EC:2.7.1.165]
LPB142_06735  keto-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
LPB142_02685  formate dehydrogenase [KO:K00126] [EC:1.17.1.9]
LPB142_02695  formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
LPB142_02700  formate dehydrogenase [KO:K00124]
LPB142_02705  NADH-quinone oxidoreductase subunit E [KO:K00127]
LPB142_11305  formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
LPB142_05635  formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
rhp00010  Glycolysis / Gluconeogenesis
rhp00020  Citrate cycle (TCA cycle)
rhp00030  Pentose phosphate pathway
rhp00053  Ascorbate and aldarate metabolism
rhp00071  Fatty acid degradation
rhp00230  Purine metabolism
rhp00250  Alanine, aspartate and glutamate metabolism
rhp00260  Glycine, serine and threonine metabolism
rhp00620  Pyruvate metabolism
rhp00710  Carbon fixation by Calvin cycle
rhp00750  Vitamin B6 metabolism
rhp00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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