KEGG   PATHWAY: rhz00630
Entry
rhz00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Rhodoplanes sp. Z2-YC6860
Class
Metabolism; Carbohydrate metabolism
Pathway map
rhz00630  Glyoxylate and dicarboxylate metabolism
rhz00630

Module
rhz_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:rhz00630]
Other DBs
GO: 0046487 0043648
Organism
Rhodoplanes sp. Z2-YC6860 [GN:rhz]
Gene
RHPLAN_61290  acetyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
RHPLAN_01800  acetyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
RHPLAN_04990  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
RHPLAN_30570  citrate synthase [KO:K01647] [EC:2.3.3.1]
RHPLAN_39190  citrate synthase I [KO:K01647] [EC:2.3.3.1]
RHPLAN_66500  citrate synthase 2 [KO:K01647] [EC:2.3.3.1]
RHPLAN_04840  Aconitate hydratase [KO:K01681] [EC:4.2.1.3]
RHPLAN_44610  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
RHPLAN_52070  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
RHPLAN_61190  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
RHPLAN_69380  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
RHPLAN_64180  3-ketoacyl-CoA thiolase [KO:K00626] [EC:2.3.1.9]
RHPLAN_69370  acetoacetyl CoA reductase [KO:K00023] [EC:1.1.1.36]
RHPLAN_34690  MaoC domain-containing protein dehydratase [KO:K17865] [EC:4.2.1.55]
RHPLAN_11780  crotonyl-CoA reductase [KO:K14446] [EC:1.3.1.85]
RHPLAN_38920  methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
RHPLAN_11770  methylmalonyl-CoA mutase [KO:K14447] [EC:5.4.99.63]
RHPLAN_11820  isobutyryl-CoA dehydrogenase [KO:K14448] [EC:1.3.8.12]
RHPLAN_04430  Mesaconyl-CoA hydratase [KO:K14449] [EC:4.2.1.148]
RHPLAN_35810  HpcH/HpaI aldolase [KO:K08691] [EC:4.1.3.24 4.1.3.25]
RHPLAN_41040  acetyl/propionyl-CoA carboxylase, alpha subunit [KO:K01965] [EC:6.4.1.3]
RHPLAN_41270  propionyl-CoA carboxylase subunit beta [KO:K01966] [EC:6.4.1.3 2.1.3.15]
RHPLAN_28920  methylmalonyl-CoA mutase, large subunit [KO:K01847] [EC:5.4.99.2]
RHPLAN_28930  methylmalonyl-CoA mutase, small subunit [KO:K01847] [EC:5.4.99.2]
RHPLAN_18970  glycolate oxidase subunit GlcD [KO:K00104] [EC:1.1.99.14]
RHPLAN_56170  FAD/FMN-dependent dehydrogenase [KO:K00104] [EC:1.1.99.14]
RHPLAN_14140  FAD linked oxidase-like protein [KO:K11472] [EC:1.1.99.14]
RHPLAN_14150  glycolate oxidase subunit F [KO:K11473] [EC:1.1.99.14]
RHPLAN_20020  catalase HPII [KO:K03781] [EC:1.11.1.6]
RHPLAN_60270  D-3-phosphoglycerate dehydrogenase [KO:K00015] [EC:1.1.1.26]
RHPLAN_62110  D-3-phosphoglycerate dehydrogenase [KO:K00015] [EC:1.1.1.26]
RHPLAN_03820  Glyoxylate reductase/Hydroxypyruvate reductase [KO:K00015] [EC:1.1.1.26]
RHPLAN_67180  2-hydroxyacid dehydrogenase [KO:K12972] [EC:1.1.1.79 1.1.1.81]
RHPLAN_70630  pphosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
RHPLAN_31650  phosphoglycolate phosphatase, bacterial [KO:K01091] [EC:3.1.3.18]
RHPLAN_50190  HAD-superfamily hydrolase [KO:K01091] [EC:3.1.3.18]
RHPLAN_60750  class V aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
RHPLAN_38390  L-glutamine synthetase [KO:K01915] [EC:6.3.1.2]
RHPLAN_15980  glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
RHPLAN_00630  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
RHPLAN_26430  L-glutamine synthetase [KO:K01915] [EC:6.3.1.2]
RHPLAN_37490  Serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
RHPLAN_05040  2-oxoglutarate dehydrogenase E3 component [KO:K00382] [EC:1.8.1.4]
RHPLAN_39550  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
RHPLAN_17610  D-glycerate 2-kinase [KO:K11529] [EC:2.7.1.165]
RHPLAN_12370  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
RHPLAN_54670  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
RHPLAN_13450  4-hydroxy-2-oxoglutarate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
RHPLAN_13290  formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
RHPLAN_13280  NADH-ubiquinone oxidoreductase chain F [KO:K22515] [EC:1.17.1.9]
RHPLAN_48250  esterase/lipase [KO:K01432] [EC:3.5.1.9]
RHPLAN_48260  esterase/lipase [KO:K01432] [EC:3.5.1.9]
RHPLAN_48270  alpha/beta hydrolase [KO:K01432] [EC:3.5.1.9]
RHPLAN_48280  esterase [KO:K01432] [EC:3.5.1.9]
RHPLAN_05700  arylformamidase [KO:K01432] [EC:3.5.1.9]
RHPLAN_70310  esterase/lipase [KO:K01432] [EC:3.5.1.9]
RHPLAN_54480  cyclase family protein [KO:K07130] [EC:3.5.1.9]
RHPLAN_13120  oxalyl-CoA decarboxylase [KO:K01577] [EC:4.1.1.8]
RHPLAN_13130  formyl-coenzyme A transferase [KO:K07749] [EC:2.8.3.16]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
rhz00010  Glycolysis / Gluconeogenesis
rhz00020  Citrate cycle (TCA cycle)
rhz00030  Pentose phosphate pathway
rhz00053  Ascorbate and aldarate metabolism
rhz00071  Fatty acid degradation
rhz00230  Purine metabolism
rhz00250  Alanine, aspartate and glutamate metabolism
rhz00260  Glycine, serine and threonine metabolism
rhz00620  Pyruvate metabolism
rhz00710  Carbon fixation by Calvin cycle
rhz00750  Vitamin B6 metabolism
rhz00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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