KEGG   PATHWAY: rot00630
Entry
rot00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Roseivivax sp. THAF197b
Class
Metabolism; Carbohydrate metabolism
Pathway map
rot00630  Glyoxylate and dicarboxylate metabolism
rot00630

Module
rot_M00373  Ethylmalonyl pathway [PATH:rot00630]
rot_M00621  Glycine cleavage system [PATH:rot00630]
rot_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:rot00630]
Other DBs
GO: 0046487 0043648
Organism
Roseivivax sp. THAF197b [GN:rot]
Gene
FIV09_13330  acsA3; Acetyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
FIV09_09635  acsA2; Acetyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
FIV09_04895  acsA1; Acetyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
FIV09_05965  glcB; Malate synthase G [KO:K01638] [EC:2.3.3.9]
FIV09_01365  mdh1; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
FIV09_06590  gltA1; Citrate synthase [KO:K01647] [EC:2.3.3.1]
FIV09_07800  acnA; Aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
FIV09_17455  bktB; Beta-ketothiolase BktB [KO:K00626] [EC:2.3.1.9]
FIV09_15550  phbA; Acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
FIV09_18830  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
FIV09_13620  fadA2; Putative acyltransferase [KO:K00626] [EC:2.3.1.9]
FIV09_02745  thlA; Acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
FIV09_02790  fadA1; 3-ketoacyl-CoA thiolase [KO:K00626] [EC:2.3.1.9]
FIV09_15560  phbB; Acetoacetyl-CoA reductase [KO:K00023] [EC:1.1.1.36]
FIV09_16660  phaJ; (R)-specific enoyl-CoA hydratase [KO:K17865] [EC:4.2.1.55]
FIV09_01485  ccrA2; Crotonyl-CoA reductase [KO:K14446] [EC:1.3.1.85]
FIV09_00565  Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein [KO:K05606] [EC:5.1.99.1]
FIV09_01475  scpA1; Methylmalonyl-CoA mutase [KO:K14447] [EC:5.4.99.63]
FIV09_15425  mmgC3; Acyl-CoA dehydrogenase [KO:K14448] [EC:1.3.8.12]
FIV09_01395  hypothetical protein [KO:K14449] [EC:4.2.1.148]
FIV09_13785  mcl2; Malyl-CoA lyase [KO:K08691] [EC:4.1.3.24 4.1.3.25]
FIV09_01380  mcl1; (3S)-malyl-CoA thioesterase [KO:K14451] [EC:3.1.2.30]
FIV09_11370  accA2; Acetyl-/propionyl-coenzyme A carboxylase alpha chain [KO:K01965] [EC:6.4.1.3]
FIV09_11395  accD2; putative propionyl-CoA carboxylase beta chain 5 [KO:K01966] [EC:6.4.1.3 2.1.3.15]
FIV09_11355  scpA3; Methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
FIV09_17155  putative FAD-linked oxidoreductase [KO:K00104] [EC:1.1.99.14]
FIV09_17160  putative FAD-linked oxidoreductase [KO:K11472] [EC:1.1.99.14]
FIV09_17170  lutA; Lactate utilization protein A [KO:K11473] [EC:1.1.99.14]
FIV09_02885  Glycerate dehydrogenase [KO:K00015] [EC:1.1.1.26]
FIV09_01540  ghrA; Glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
FIV09_01665  gph1; Phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
FIV09_02530  gph2; Phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
FIV09_02750  cbbZC; Phosphoglycolate phosphatase, chromosomal [KO:K01091] [EC:3.1.3.18]
FIV09_04865  gph3; Phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
FIV09_12740  Soluble hydrogenase 42 kDa subunit [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
FIV09_07300  Soluble hydrogenase 42 kDa subunit [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
FIV09_03965  puuA1; Gamma-glutamylputrescine synthetase PuuA [KO:K01915] [EC:6.3.1.2]
FIV09_03975  puuA2; Gamma-glutamylputrescine synthetase PuuA [KO:K01915] [EC:6.3.1.2]
FIV09_07860  glnA; Glutamine synthetase [KO:K01915] [EC:6.3.1.2]
FIV09_03005  glyA1; Serine hydroxymethyltransferase 1 [KO:K00600] [EC:2.1.2.1]
FIV09_04530  gcvP; Glycine dehydrogenase (decarboxylating) [KO:K00281] [EC:1.4.4.2]
FIV09_04520  gcvT1; Aminomethyltransferase [KO:K00605] [EC:2.1.2.10]
FIV09_01315  lpd3; Dihydrolipoyl dehydrogenase 3 [KO:K00382] [EC:1.8.1.4]
FIV09_00385  lpdA; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
FIV09_04525  gcvH; Glycine cleavage system H protein [KO:K02437]
FIV09_09400  hyi1; Hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
FIV09_07135  ttuD2; Putative hydroxypyruvate reductase [KO:K11529] [EC:2.7.1.165]
FIV09_02570  ttuD1; Putative hydroxypyruvate reductase [KO:K11529] [EC:2.7.1.165]
FIV09_07140  ttuC'; putative tartrate dehydrogenase/decarboxylase TtuC' [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
FIV09_07505  eda; KHG/KDPG aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
FIV09_00760  fdhF; Formate dehydrogenase H [KO:K00123] [EC:1.17.1.9]
FIV09_14060  fdnG; Formate dehydrogenase, nitrate-inducible, major subunit precursor [KO:K00123] [EC:1.17.1.9]
FIV09_03080  hndC; NADP-reducing hydrogenase subunit HndC [KO:K22515] [EC:1.17.1.9]
FIV09_14065  fdhB1; Formate dehydrogenase iron-sulfur subunit [KO:K00124]
FIV09_14070  fdnI; Formate dehydrogenase, nitrate-inducible, cytochrome b556(Fdn) subunit [KO:K00127]
FIV09_17190  Alpha/beta hydrolase family protein [KO:K01432] [EC:3.5.1.9]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
rot00010  Glycolysis / Gluconeogenesis
rot00020  Citrate cycle (TCA cycle)
rot00030  Pentose phosphate pathway
rot00053  Ascorbate and aldarate metabolism
rot00071  Fatty acid degradation
rot00230  Purine metabolism
rot00250  Alanine, aspartate and glutamate metabolism
rot00260  Glycine, serine and threonine metabolism
rot00620  Pyruvate metabolism
rot00710  Carbon fixation by Calvin cycle
rot00750  Vitamin B6 metabolism
rot00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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