KEGG   PATHWAY: saz00020
Entry
saz00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Shewanella amazonensis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
saz00020  Citrate cycle (TCA cycle)
saz00020

Module
saz_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:saz00020]
saz_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:saz00020]
saz_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:saz00020]
saz_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:saz00020]
saz_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:saz00020]
Other DBs
GO: 0006099
Organism
Shewanella amazonensis [GN:saz]
Gene
Sama_1422  citrate synthase [KO:K01647] [EC:2.3.3.1]
Sama_0382  aconitase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
Sama_2059  Isocitrate dehydrogenase (NADP(+)) [KO:K00031] [EC:1.1.1.42]
Sama_2423  Isocitrate dehydrogenase (NAD(+)) [KO:K00030] [EC:1.1.1.41]
Sama_1427  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
Sama_1428  2-oxoglutarate dehydrogenase E2 component [KO:K00658] [EC:2.3.1.61]
Sama_0377  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Sama_1430  succinyl-CoA synthetase (ADP-forming) alpha subunit [KO:K01902] [EC:6.2.1.5]
Sama_1429  succinyl-CoA synthetase (ADP-forming) beta subunit [KO:K01903] [EC:6.2.1.5]
Sama_1425  succinate dehydrogenase subunit A [KO:K00239] [EC:1.3.5.1]
Sama_1426  succinate dehydrogenase subunit B [KO:K00240] [EC:1.3.5.1]
Sama_1423  succinate dehydrogenase subunit C [KO:K00241]
Sama_1424  succinate dehydrogenase subunit D [KO:K00242]
Sama_3220  succinate dehydrogenase subunit A [KO:K00233] [EC:1.3.5.1 7.1.1.12]
Sama_3219  succinate dehydrogenase subunit B [KO:K25995] [EC:1.3.5.1 7.1.1.12]
Sama_3222  fumarate reductase cytochrome B subunit [KO:K25996]
Sama_3221  fumarate reductase cytochrome B subunit [KO:K25996]
Sama_0611  fumarate reductase flavoprotein subunit precursor [KO:K26318] [EC:1.3.2.4]
Sama_1688  fumarase [KO:K01676] [EC:4.2.1.2]
Sama_0822  fumarase [KO:K01679] [EC:4.2.1.2]
Sama_0672  malate dehydrogenase (NAD) [KO:K00024] [EC:1.1.1.37]
Sama_0165  Phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
Sama_0375  pyruvate dehydrogenase, E1 component [KO:K00163] [EC:1.2.4.1]
Sama_0376  Dihydrolipoyllysine-residue succinyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
saz00010  Glycolysis / Gluconeogenesis
saz00053  Ascorbate and aldarate metabolism
saz00061  Fatty acid biosynthesis
saz00071  Fatty acid degradation
saz00190  Oxidative phosphorylation
saz00220  Arginine biosynthesis
saz00250  Alanine, aspartate and glutamate metabolism
saz00280  Valine, leucine and isoleucine degradation
saz00350  Tyrosine metabolism
saz00470  D-Amino acid metabolism
saz00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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