KEGG   PATHWAY: sdj00270
Entry
sdj00270                    Pathway                                
Name
Cysteine and methionine metabolism - Sphingobacterium daejeonense
Description
Cysteine and methionine are sulfur-containing amino acids. Cysteine is synthesized from serine through different pathways in different organism groups. In bacteria and plants, cysteine is converted from serine (via acetylserine) by transfer of hydrogen sulfide [MD:M00021]. In animals, methionine-derived homocysteine is used as sulfur source and its condensation product with serine (cystathionine) is converted to cysteine [MD:M00338]. Cysteine is metabolized to pyruvate in multiple routes. Methionine is an essential amino acid, which animals cannot synthesize. In bacteria and plants, methionine is synthesized from aspartate [MD:M00017]. S-Adenosylmethionine (SAM), synthesized from methionine and ATP, is a methyl group donor in many important transfer reactions including DNA methylation for regulation of gene expression. SAM may also be used to regenerate methionine in the methionine salvage pathway [MD:M00034].
Class
Metabolism; Amino acid metabolism
Pathway map
sdj00270  Cysteine and methionine metabolism
sdj00270

Module
sdj_M00338  Cysteine biosynthesis, homocysteine + serine => cysteine [PATH:sdj00270]
Other DBs
GO: 0006534 0006555
Organism
Sphingobacterium daejeonense [GN:sdj]
Gene
NCTC13534_03408  cysE_1; Serine acetyltransferase [KO:K00640] [EC:2.3.1.30]
NCTC13534_04452  cysE_2; Serine acetyltransferase [KO:K00640] [EC:2.3.1.30]
NCTC13534_04453  cysE_3; Serine acetyltransferase [KO:K00640] [EC:2.3.1.30]
NCTC13534_05279  cysE_4; Serine acetyltransferase [KO:K00640] [EC:2.3.1.30]
NCTC13534_03632  metC; Cystathionine beta-lyase [KO:K01758] [EC:4.4.1.1]
NCTC13534_02748  cysM_1; Cysteine synthase B [KO:K01697] [EC:4.2.1.22]
NCTC13534_03679  cbs; Putative cystathionine beta-synthase Rv1077 [KO:K01697] [EC:4.2.1.22]
NCTC13534_04822  metE_1; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [KO:K00549] [EC:2.1.1.14]
NCTC13534_04823  metE_2; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [KO:K00549] [EC:2.1.1.14]
NCTC13534_05384  metK; S-adenosylmethionine synthase [KO:K00789] [EC:2.5.1.6]
NCTC13534_00485  msrC; Free methionine-R-sulfoxide reductase [KO:K08968] [EC:1.8.4.14]
NCTC13534_04839  ahcY; Adenosylhomocysteinase [KO:K01251] [EC:3.13.2.1]
NCTC13534_03438  dcyD_3; D-cysteine desulfhydrase [KO:K01505] [EC:3.5.99.7]
NCTC13534_03208  lysC_1; Lysine-sensitive aspartokinase 3 [KO:K00928] [EC:2.7.2.4]
NCTC13534_04000  lysC_2; Lysine-sensitive aspartokinase 3 [KO:K00928] [EC:2.7.2.4]
NCTC13534_01196  thrA; Aspartokinase I/homoserine dehydrogenase I [KO:K12524] [EC:2.7.2.4 1.1.1.3]
NCTC13534_00313  asd; Aspartate-semialdehyde dehydrogenase [KO:K00133] [EC:1.2.1.11]
NCTC13534_02027  hom_2; Homoserine dehydrogenase [KO:K00003] [EC:1.1.1.3]
NCTC13534_02028  metX; Homoserine O-acetyltransferase [KO:K00641] [EC:2.3.1.31 2.3.1.46]
NCTC13534_02029  mdeA_1; Methionine gamma-lyase [KO:K01740] [EC:2.5.1.49]
NCTC13534_04686  metZ; O-succinylhomoserine sulfhydrylase [KO:K10764] [EC:2.5.1.-]
NCTC13534_00626  ilvE_1; Probable branched-chain-amino-acid aminotransferase [KO:K00826] [EC:2.6.1.42]
NCTC13534_03435  pabC; Aminodeoxychorismate lyase [KO:K00826] [EC:2.6.1.42]
NCTC13534_04636  ilvE_2; Branched-chain-amino-acid aminotransferase [KO:K00826] [EC:2.6.1.42]
NCTC13534_04091  gshB_1; Glutathione synthetase [KO:K01920] [EC:6.3.2.3]
NCTC13534_02765  Aspartate aminotransferase [KO:K00812] [EC:2.6.1.1]
NCTC13534_02766  aspC_1; Aspartate aminotransferase [KO:K00812] [EC:2.6.1.1]
NCTC13534_03135  aspC_2; Aspartate aminotransferase [KO:K00812] [EC:2.6.1.1]
NCTC13534_04340  sseA; 3-mercaptopyruvate sulfurtransferase [KO:K01011] [EC:2.8.1.1 2.8.1.2]
NCTC13534_03084  dcyD_2; D-cysteine desulfhydrase [KO:K05396] [EC:4.4.1.15]
NCTC13534_01900  mdh; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
NCTC13534_00338  sdaA; L-serine dehydratase 1 [KO:K01752] [EC:4.3.1.17]
NCTC13534_04450  cysM_2; Cysteine synthase B [KO:K12339] [EC:2.5.1.144]
NCTC13534_04989  D-3-phosphoglycerate dehydrogenase [KO:K00058] [EC:1.1.1.95 1.1.1.399]
NCTC13534_00609  serA_1; D-3-phosphoglycerate dehydrogenase [KO:K00058] [EC:1.1.1.95 1.1.1.399]
NCTC13534_03209  serA_2; D-3-phosphoglycerate dehydrogenase [KO:K00058] [EC:1.1.1.95 1.1.1.399]
NCTC13534_03720  serA_3; D-3-phosphoglycerate dehydrogenase [KO:K00058] [EC:1.1.1.95 1.1.1.399]
NCTC13534_03210  serC_1; Phosphoserine aminotransferase [KO:K00831] [EC:2.6.1.52]
NCTC13534_03211  serC_2; Phosphoserine aminotransferase [KO:K00831] [EC:2.6.1.52]
NCTC13534_05490  serC_3; Phosphoserine aminotransferase [KO:K00831] [EC:2.6.1.52]
NCTC13534_05491  serC_4; Phosphoserine aminotransferase [KO:K00831] [EC:2.6.1.52]
Compound
C00019  S-Adenosyl-L-methionine
C00021  S-Adenosyl-L-homocysteine
C00022  Pyruvate
C00041  L-Alanine
C00049  L-Aspartate
C00051  Glutathione
C00059  Sulfate
C00065  L-Serine
C00073  L-Methionine
C00094  Sulfite
C00097  L-Cysteine
C00109  2-Oxobutanoate
C00155  L-Homocysteine
C00170  5'-Methylthioadenosine
C00197  3-Phospho-D-glycerate
C00263  L-Homoserine
C00283  Hydrogen sulfide
C00409  Methanethiol
C00441  L-Aspartate 4-semialdehyde
C00491  L-Cystine
C00506  L-Cysteate
C00606  3-Sulfino-L-alanine
C00793  D-Cysteine
C00957  Mercaptopyruvate
C00979  O-Acetyl-L-serine
C01005  O-Phospho-L-serine
C01077  O-Acetyl-L-homoserine
C01118  O-Succinyl-L-homoserine
C01137  S-Adenosylmethioninamine
C01180  4-Methylthio-2-oxobutanoic acid
C01234  1-Aminocyclopropane-1-carboxylate
C01817  L-Homocystine
C01962  Thiocysteine
C02218  Dehydroalanine
C02291  L-Cystathionine
C02356  (S)-2-Aminobutanoate
C02989  L-Methionine S-oxide
C03082  4-Phospho-L-aspartate
C03089  5-Methylthio-D-ribose
C03145  N-Formylmethionine
C03232  3-Phosphonooxypyruvate
C03431  S-Inosyl-L-homocysteine
C03539  S-Ribosyl-L-homocysteine
C04188  S-Methyl-5-thio-D-ribose 1-phosphate
C04582  S-Methyl-5-thio-D-ribulose 1-phosphate
C05324  Nicotianamine
C05524  Aminoacyl-L-methionine
C05526  S-Glutathionyl-L-cysteine
C05527  3-Sulfinylpyruvate
C05528  3-Sulfopyruvate
C05823  3-Mercaptolactate
C05824  S-Sulfo-L-cysteine
C06547  Ethylene
C08276  3-(Methylthio)propanoate
C09306  Sulfur dioxide
C11437  1-Deoxy-D-xylulose 5-phosphate
C11481  HSO3-
C11499  (S)-3-Sulfolactate
C11537  (2R)-3-Sulfolactate
C15606  1,2-Dihydroxy-5-(methylthio)pent-1-en-3-one
C15650  2,3-Diketo-5-methylthiopentyl-1-phosphate
C15651  2-Hydroxy-3-keto-5-methylthiopentenyl-1-phosphate
C18049  N-Acyl-L-homoserine lactone
C19787  5'-S-Methyl-5'-thioinosine
C21015  gamma-L-Glutamyl-L-2-aminobutyrate
C21016  Ophthalmate
C22359  S-Methyl-1-thio-D-xylulose 5-phosphate
Reference
  Authors
Sekowska A, Denervaud V, Ashida H, Michoud K, Haas D, Yokota A, Danchin A
  Title
Bacterial variations on the methionine salvage pathway.
  Journal
BMC Microbiol 4:9 (2004)
DOI:10.1186/1471-2180-4-9
Reference
  Authors
Ashida H, Saito Y, Kojima C, Kobayashi K, Ogasawara N, Yokota A.
  Title
A functional link between RuBisCO-like protein of Bacillus and photosynthetic RuBisCO.
  Journal
Science 302:286-90 (2003)
DOI:10.1126/science.1086997
Reference
  Authors
Sekowska A, Danchin A.
  Title
The methionine salvage pathway in Bacillus subtilis.
  Journal
BMC Microbiol 2:8 (2002)
DOI:10.1186/1471-2180-2-8
Reference
  Authors
Berger BJ, English S, Chan G, Knodel MH.
  Title
Methionine regeneration and aminotransferases in Bacillus subtilis, Bacillus cereus, and Bacillus anthracis.
  Journal
J Bacteriol 185:2418-31 (2003)
DOI:10.1128/JB.185.8.2418-2431.2003
Reference
  Authors
Goyer A, Collakova E, Shachar-Hill Y, Hanson AD
  Title
Functional characterization of a methionine gamma-lyase in Arabidopsis and its implication in an alternative to the reverse trans-sulfuration pathway.
  Journal
Plant Cell Physiol 48:232-42 (2007)
DOI:10.1093/pcp/pcl055
Reference
  Authors
Rebeille F, Jabrin S, Bligny R, Loizeau K, Gambonnet B, Van Wilder V, Douce R, Ravanel S
  Title
Methionine catabolism in Arabidopsis cells is initiated by a gamma-cleavage process and leads to S-methylcysteine and isoleucine syntheses.
  Journal
Proc Natl Acad Sci U S A 103:15687-92 (2006)
DOI:10.1073/pnas.0606195103
Reference
  Authors
Pirkov I, Norbeck J, Gustafsson L, Albers E
  Title
A complete inventory of all enzymes in the eukaryotic methionine salvage pathway.
  Journal
FEBS J 275:4111-20 (2008)
DOI:10.1111/j.1742-4658.2008.06552.x
Reference
  Authors
Ashida H, Saito Y, Kojima C, Yokota A
  Title
Enzymatic characterization of 5-methylthioribulose-1-phosphate dehydratase of the methionine salvage pathway in Bacillus subtilis.
  Journal
Biosci Biotechnol Biochem 72:959-67 (2008)
DOI:10.1271/bbb.70651
Reference
  Authors
Kitabatake M, So MW, Tumbula DL, Soll D
  Title
Cysteine biosynthesis pathway in the archaeon Methanosarcina barkeri encoded by acquired bacterial genes?
  Journal
J Bacteriol 182:143-5 (2000)
DOI:10.1128/JB.182.1.143-145.2000
Reference
  Authors
Mino K, Ishikawa K
  Title
Characterization of a novel thermostable O-acetylserine sulfhydrylase from Aeropyrum pernix K1.
  Journal
J Bacteriol 185:2277-84 (2003)
DOI:10.1128/JB.185.7.2277-2284.2003
Reference
  Authors
Tanabe S
  Title
Development of assay methods for endogenous inorganic sulfur compounds and sulfurtransferases and evaluation of the physiological functions of bound sulfur.
  Journal
Yakugaku Zasshi 128:881-900 (2008)
DOI:10.1248/yakushi.128.881
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Gutierrez JA, Crowder T, Rinaldo-Matthis A, Ho MC, Almo SC, Schramm VL
  Title
Transition state analogs of 5'-methylthioadenosine nucleosidase disrupt quorum sensing.
  Journal
Nat Chem Biol 5:251-7 (2009)
DOI:10.1038/nchembio.153
Related
pathway
sdj00010  Glycolysis / Gluconeogenesis
sdj00250  Alanine, aspartate and glutamate metabolism
sdj00260  Glycine, serine and threonine metabolism
sdj00290  Valine, leucine and isoleucine biosynthesis
sdj00480  Glutathione metabolism
sdj00620  Pyruvate metabolism
sdj00640  Propanoate metabolism
sdj00770  Pantothenate and CoA biosynthesis
sdj00900  Terpenoid backbone biosynthesis
sdj00920  Sulfur metabolism
KO pathway
ko00270   
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