KEGG   PATHWAY: sfd00970
Entry
sfd00970                    Pathway                                
Name
Aminoacyl-tRNA biosynthesis - Sinorhizobium fredii USDA 257
Class
Genetic Information Processing; Translation
Pathway map
sfd00970  Aminoacyl-tRNA biosynthesis
sfd00970

Organism
Sinorhizobium fredii USDA 257 [GN:sfd]
Gene
USDA257_c60930  trnA5; tRNA-Ala [KO:K14218]
USDA257_c37630  trnA1; tRNA-Ala [KO:K14218]
USDA257_c50160  trnA2; tRNA-Ala [KO:K14218]
USDA257_c54530  trnA3; tRNA-Ala [KO:K14218]
USDA257_c59370  trnA4; tRNA-Ala [KO:K14218]
USDA257_c00850  trnR1; tRNA-Arg [KO:K14219]
USDA257_c36210  trnR2; tRNA-Arg [KO:K14219]
USDA257_c47850  trnR3; tRNA-Arg [KO:K14219]
USDA257_c54670  trnR4; tRNA-Arg [KO:K14219]
USDA257_c37590  trnN; tRNA-Asn [KO:K14220]
USDA257_c32980  trnD1; tRNA-Asp [KO:K14221]
USDA257_c32990  trnD2; tRNA-Asp [KO:K14221]
USDA257_c37600  trnC; tRNA-Cys [KO:K14222]
USDA257_c04690  trnQ1; tRNA-Gln [KO:K14223]
USDA257_c06640  trnQ2; tRNA-Gln [KO:K14223]
USDA257_c35980  trnE1; tRNA-Glu [KO:K14224]
USDA257_c36150  trnE3; tRNA-Glu [KO:K14224]
USDA257_c36110  trnE2; tRNA-Glu [KO:K14224]
USDA257_c36160  trnE4; tRNA-Glu [KO:K14224]
USDA257_c33730  trnG2; tRNA-Gly [KO:K14225]
USDA257_c01380  trnG1; tRNA-Gly [KO:K14225]
USDA257_c56970  trnG3; tRNA-Gly [KO:K14225]
USDA257_c03760  trnH; tRNA-His [KO:K14226]
USDA257_c50170  trnI1; tRNA-Ile [KO:K14227]
USDA257_c54540  trnI2; tRNA-Ile [KO:K14227]
USDA257_c59360  trnI3; tRNA-Ile [KO:K14227]
USDA257_c61020  trnL5; tRNA-Leu [KO:K14228]
USDA257_c34310  trnL1; tRNA-Leu [KO:K14228]
USDA257_c35860  trnL2; tRNA-Leu [KO:K14228]
USDA257_c37020  trnL3; tRNA-Leu [KO:K14228]
USDA257_c50430  trnL4; tRNA-Leu [KO:K14228]
USDA257_c36630  trnK1; tRNA-Lys [KO:K14229]
USDA257_c43470  trnK2; tRNA-Lys [KO:K14229]
USDA257_c51730  trnM3; tRNA-Met [KO:K14230]
USDA257_c50130  trnM2; tRNA-Met [KO:K14230]
USDA257_c59400  trnM5; tRNA-Met [KO:K14230]
USDA257_c54500  trnM4; tRNA-Met [KO:K14230]
USDA257_c46330  trnM1; tRNA-Met [KO:K14230]
USDA257_c02160  trnF; tRNA-Phe [KO:K14231]
USDA257_c06670  trnP1; tRNA-Pro [KO:K14232]
USDA257_c32610  trnP2; tRNA-Pro [KO:K14232]
USDA257_c36200  trnP3; tRNA-Pro [KO:K14232]
USDA257_c60410  trnS4; tRNA-Ser [KO:K14233]
USDA257_c40440  trnS2; tRNA-Ser [KO:K14233]
USDA257_c07870  trnS1; tRNA-Ser [KO:K14233]
USDA257_c56740  trnS3; tRNA-Ser [KO:K14233]
USDA257_c01200  trnT1; tRNA-Thr [KO:K14234]
USDA257_c02070  trnT2; tRNA-Thr [KO:K14234]
USDA257_c33680  trnT3; tRNA-Thr [KO:K14234]
USDA257_c33760  trnW; tRNA-Trp [KO:K14235]
USDA257_c33720  trnY; tRNA-Tyr [KO:K14236]
USDA257_c32970  trnV1; tRNA-Val [KO:K14237]
USDA257_c52900  trnV2; tRNA-Val [KO:K14237]
USDA257_c53750  gltX; glutamate--tRNA ligase GltX [KO:K01885] [EC:6.1.1.17]
USDA257_c33480  gatA2; glutamyl-tRNA(Gln) amidotransferase subunit A [KO:K02433] [EC:6.3.5.6 6.3.5.7]
USDA257_c60330  putative glutamyl-tRNA amidotransferase subunit A protein [KO:K02433] [EC:6.3.5.6 6.3.5.7]
USDA257_c56070  gatA3; glutamyl-tRNA(Gln) amidotransferase subunit A [KO:K02433] [EC:6.3.5.6 6.3.5.7]
USDA257_c33510  gatB; aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B [KO:K02434] [EC:6.3.5.6 6.3.5.7]
USDA257_c33470  gatC; aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C [KO:K02435] [EC:6.3.5.6 6.3.5.7]
USDA257_c40720  alaS; alanine--tRNA ligase AlaS [KO:K01872] [EC:6.1.1.7]
USDA257_c09140  aspS; aspartate--tRNA ligase AspS [KO:K01876] [EC:6.1.1.12]
USDA257_c05610  glyQ; glycine--tRNA ligase alpha subunit GlyQ [KO:K01878] [EC:6.1.1.14]
USDA257_c05650  glyS; glycine--tRNA ligase beta subunit GlyS [KO:K01879] [EC:6.1.1.14]
USDA257_c34600  thrS; threonine--tRNA ligase ThrS [KO:K01868] [EC:6.1.1.3]
USDA257_c35710  serS; serine--tRNA ligase SerS [KO:K01875] [EC:6.1.1.11]
USDA257_c08350  cysS; cysteine--tRNA ligase CysS [KO:K01883] [EC:6.1.1.16]
USDA257_c40380  metG; methionine--tRNA ligase MetG [KO:K01874] [EC:6.1.1.10]
USDA257_c00580  fmt1; methionyl-tRNA formyltransferase Fmt [KO:K00604] [EC:2.1.2.9]
USDA257_c35550  valS; valine--tRNA ligase ValS [KO:K01873] [EC:6.1.1.9]
USDA257_c58490  leuS; leucine--tRNA ligase LeuS [KO:K01869] [EC:6.1.1.4]
USDA257_c05130  ileS; isoleucine--tRNA ligase IleS [KO:K01870] [EC:6.1.1.5]
USDA257_c53760  lysS; lysine--tRNA ligase LysS [KO:K04567] [EC:6.1.1.6]
USDA257_c35620  argS; arginine--tRNA ligase ArgS [KO:K01887] [EC:6.1.1.19]
USDA257_c33170  proS; proline--tRNA ligase ProS [KO:K01881] [EC:6.1.1.15]
USDA257_c05010  hisS; histidine--tRNA ligase HisS [KO:K01892] [EC:6.1.1.21]
USDA257_c61340  pheS; phenylalanine--tRNA ligase alpha chain [KO:K01889] [EC:6.1.1.20]
USDA257_c61350  pheT; phenylalanine--tRNA ligase beta chain [KO:K01890] [EC:6.1.1.20]
USDA257_c37960  tyrS; tyrosine--tRNA ligase TyrS [KO:K01866] [EC:6.1.1.1]
USDA257_c00350  trpS; tryptophan--tRNA ligase TrpS [KO:K01867] [EC:6.1.1.2]
Compound
C00025  L-Glutamate
C00037  Glycine
C00041  L-Alanine
C00047  L-Lysine
C00049  L-Aspartate
C00062  L-Arginine
C00064  L-Glutamine
C00065  L-Serine
C00073  L-Methionine
C00078  L-Tryptophan
C00079  L-Phenylalanine
C00082  L-Tyrosine
C00097  L-Cysteine
C00101  Tetrahydrofolate
C00123  L-Leucine
C00135  L-Histidine
C00148  L-Proline
C00152  L-Asparagine
C00183  L-Valine
C00188  L-Threonine
C00234  10-Formyltetrahydrofolate
C00407  L-Isoleucine
C00886  L-Alanyl-tRNA
C01005  O-Phospho-L-serine
C01931  L-Lysyl-tRNA
C02047  L-Leucyl-tRNA
C02163  L-Arginyl-tRNA(Arg)
C02282  Glutaminyl-tRNA
C02412  Glycyl-tRNA(Gly)
C02430  L-Methionyl-tRNA
C02553  L-Seryl-tRNA(Ser)
C02554  L-Valyl-tRNA(Val)
C02702  L-Prolyl-tRNA(Pro)
C02839  L-Tyrosyl-tRNA(Tyr)
C02984  L-Aspartyl-tRNA(Asp)
C02987  L-Glutamyl-tRNA(Glu)
C02988  L-Histidyl-tRNA(His)
C02992  L-Threonyl-tRNA(Thr)
C03125  L-Cysteinyl-tRNA(Cys)
C03127  L-Isoleucyl-tRNA(Ile)
C03294  N-Formylmethionyl-tRNA
C03402  L-Asparaginyl-tRNA(Asn)
C03511  L-Phenylalanyl-tRNA(Phe)
C03512  L-Tryptophanyl-tRNA(Trp)
C06112  L-Glutamyl-tRNA(Gln)
C06113  L-Aspartyl-tRNA(Asn)
C06481  L-Seryl-tRNA(Sec)
C06482  L-Selenocysteinyl-tRNA(Sec)
C16138  L-Pyrrolysine
C16638  O-Phosphoseryl-tRNA(Sec)
C17022  O-Phosphoseryl-tRNA(Cys)
C17027  L-Pyrrolysyl-tRNA(Pyl)
Reference
PMID:18252769
  Authors
Sheppard K, Yuan J, Hohn MJ, Jester B, Devine KM, Soll D
  Title
From one amino acid to another: tRNA-dependent amino acid biosynthesis.
  Journal
Nucleic Acids Res 36:1813-25 (2008)
DOI:10.1093/nar/gkn015
Reference
PMID:15314242
  Authors
Polycarpo C, Ambrogelly A, Berube A, Winbush SM, McCloskey JA, Crain PF, Wood JL, Soll D
  Title
An aminoacyl-tRNA synthetase that specifically activates pyrrolysine.
  Journal
Proc Natl Acad Sci U S A 101:12450-4 (2004)
DOI:10.1073/pnas.0405362101
Related
pathway
sfd00250  Alanine, aspartate and glutamate metabolism
sfd00260  Glycine, serine and threonine metabolism
sfd00270  Cysteine and methionine metabolism
sfd00290  Valine, leucine and isoleucine biosynthesis
sfd00300  Lysine biosynthesis
sfd00330  Arginine and proline metabolism
sfd00340  Histidine metabolism
sfd00380  Tryptophan metabolism
sfd00400  Phenylalanine, tyrosine and tryptophan biosynthesis
KO pathway
ko00970   
LinkDB

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