KEGG   PATHWAY: slo00020
Entry
slo00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Shewanella loihica
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
slo00020  Citrate cycle (TCA cycle)
slo00020

Module
slo_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:slo00020]
slo_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:slo00020]
slo_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:slo00020]
slo_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:slo00020]
slo_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:slo00020]
Other DBs
GO: 0006099
Organism
Shewanella loihica [GN:slo]
Gene
Shew_1650  citrate synthase [KO:K01647] [EC:2.3.3.1]
Shew_1821  2-methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
Shew_3424  aconitase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
Shew_1563  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
Shew_2760  Isocitrate dehydrogenase (NAD(+)) [KO:K00030] [EC:1.1.1.41]
Shew_1655  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
Shew_1656  2-oxoglutarate dehydrogenase E2 component [KO:K00658] [EC:2.3.1.61]
Shew_3429  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Shew_1658  succinyl-CoA synthetase (ADP-forming) alpha subunit [KO:K01902] [EC:6.2.1.5]
Shew_1657  succinyl-CoA synthetase (ADP-forming) beta subunit [KO:K01903] [EC:6.2.1.5]
Shew_1653  succinate dehydrogenase subunit A [KO:K00239] [EC:1.3.5.1]
Shew_1654  succinate dehydrogenase subunit B [KO:K00240] [EC:1.3.5.1]
Shew_1651  succinate dehydrogenase subunit C [KO:K00241]
Shew_1652  succinate dehydrogenase subunit D [KO:K00242]
Shew_0334  succinate dehydrogenase subunit A [KO:K00233] [EC:1.3.5.1 7.1.1.12]
Shew_0335  succinate dehydrogenase subunit B [KO:K25995] [EC:1.3.5.1 7.1.1.12]
Shew_0332  fumarate reductase respiratory complex, transmembrane subunit [KO:K25996]
Shew_0333  fumarate reductase respiratory complex, transmembrane subunit [KO:K25996]
Shew_3112  flavocytochrome c [KO:K26318] [EC:1.3.2.4]
Shew_1904  fumarase [KO:K01676] [EC:4.2.1.2]
Shew_0068  fumarase [KO:K01679] [EC:4.2.1.2]
Shew_0867  malate dehydrogenase (NAD) [KO:K00024] [EC:1.1.1.37]
Shew_3623  Phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
Shew_3431  2-oxo-acid dehydrogenase E1 subunit, homodimeric type [KO:K00163] [EC:1.2.4.1]
Shew_3430  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
slo00010  Glycolysis / Gluconeogenesis
slo00061  Fatty acid biosynthesis
slo00071  Fatty acid degradation
slo00190  Oxidative phosphorylation
slo00220  Arginine biosynthesis
slo00250  Alanine, aspartate and glutamate metabolism
slo00280  Valine, leucine and isoleucine degradation
slo00350  Tyrosine metabolism
slo00470  D-Amino acid metabolism
slo00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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