KEGG   PATHWAY: smuc00020
Entry
smuc00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Skermanella mucosa
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
smuc00020  Citrate cycle (TCA cycle)
smuc00020

Module
smuc_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:smuc00020]
smuc_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:smuc00020]
smuc_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:smuc00020]
smuc_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:smuc00020]
smuc_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:smuc00020]
Other DBs
GO: 0006099
Organism
Skermanella mucosa [GN:smuc]
Gene
JL100_014440  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
JL100_002900  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
JL100_002895  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
JL100_024305  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
JL100_025405  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
JL100_025400  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
JL100_025375  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
JL100_032180  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
JL100_012260  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
JL100_025410  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
JL100_034930  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
JL100_025415  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
JL100_034925  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
JL100_011205  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
JL100_011200  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
JL100_011215  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
JL100_011210  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
JL100_035235  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
JL100_020630  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
JL100_025420  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
JL100_032450  pyc; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
JL100_026340  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
JL100_026950  transketolase [KO:K00163] [EC:1.2.4.1]
JL100_032190  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
JL100_012275  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
JL100_012270  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
JL100_032185  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
JL100_012265  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
JL100_013985  acetoin dehydrogenase dihydrolipoyllysine-residue acetyltransferase subunit [KO:K00627] [EC:2.3.1.12]
JL100_028120  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
smuc00010  Glycolysis / Gluconeogenesis
smuc00053  Ascorbate and aldarate metabolism
smuc00061  Fatty acid biosynthesis
smuc00071  Fatty acid degradation
smuc00190  Oxidative phosphorylation
smuc00220  Arginine biosynthesis
smuc00250  Alanine, aspartate and glutamate metabolism
smuc00280  Valine, leucine and isoleucine degradation
smuc00350  Tyrosine metabolism
smuc00470  D-Amino acid metabolism
smuc00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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