KEGG   PATHWAY: sroi00270
Entry
sroi00270                   Pathway                                
Name
Cysteine and methionine metabolism - Streptomyces roseirectus
Description
Cysteine and methionine are sulfur-containing amino acids. Cysteine is synthesized from serine through different pathways in different organism groups. In bacteria and plants, cysteine is converted from serine (via acetylserine) by transfer of hydrogen sulfide [MD:M00021]. In animals, methionine-derived homocysteine is used as sulfur source and its condensation product with serine (cystathionine) is converted to cysteine [MD:M00338]. Cysteine is metabolized to pyruvate in multiple routes. Methionine is an essential amino acid, which animals cannot synthesize. In bacteria and plants, methionine is synthesized from aspartate [MD:M00017]. S-Adenosylmethionine (SAM), synthesized from methionine and ATP, is a methyl group donor in many important transfer reactions including DNA methylation for regulation of gene expression. SAM may also be used to regenerate methionine in the methionine salvage pathway [MD:M00034].
Class
Metabolism; Amino acid metabolism
Pathway map
sroi00270  Cysteine and methionine metabolism
sroi00270

Module
sroi_M00021  Cysteine biosynthesis, serine => cysteine [PATH:sroi00270]
sroi_M00035  Methionine degradation [PATH:sroi00270]
sroi_M00338  Cysteine biosynthesis, homocysteine + serine => cysteine [PATH:sroi00270]
Other DBs
GO: 0006534 0006555
Organism
Streptomyces roseirectus [GN:sroi]
Gene
IAG44_00630  serine acetyltransferase [KO:K00640] [EC:2.3.1.30]
IAG44_05090  PLP-dependent cysteine synthase family protein [KO:K01738] [EC:2.5.1.47]
IAG44_20910  cystathionine gamma-lyase [KO:K01758] [EC:4.4.1.1]
IAG44_00550  pyridoxal phosphate-dependent aminotransferase [KO:K14155] [EC:4.4.1.13]
IAG44_00635  aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme [KO:K14155] [EC:4.4.1.13]
IAG44_24625  cystathionine beta-synthase [KO:K01697] [EC:4.2.1.22]
IAG44_08400  mmuM; homocysteine S-methyltransferase [KO:K00547] [EC:2.1.1.10]
IAG44_32225  metH; methionine synthase [KO:K00548] [EC:2.1.1.13]
IAG44_35570  metE; 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase [KO:K00549] [EC:2.1.1.14]
IAG44_17875  methionine adenosyltransferase [KO:K00789] [EC:2.5.1.6]
IAG44_33230  methionine adenosyltransferase [KO:K00789] [EC:2.5.1.6]
IAG44_26630  S-adenosylmethionine decarboxylase [KO:K01611] [EC:4.1.1.50]
IAG44_00575  speD; adenosylmethionine decarboxylase [KO:K01611] [EC:4.1.1.50]
IAG44_18545  polyamine aminopropyltransferase [KO:K00797] [EC:2.5.1.16]
IAG44_32195  mtnK; S-methyl-5-thioribose kinase [KO:K00899] [EC:2.7.1.100]
IAG44_23835  S-methyl-5'-thioadenosine phosphorylase [KO:K00772] [EC:2.4.2.28]
IAG44_29795  pgeF; peptidoglycan editing factor PgeF [KO:K05810] [EC:2.4.2.1 2.4.2.28 3.5.4.4]
IAG44_30345  amidohydrolase [KO:K12960] [EC:3.5.4.31 3.5.4.28]
IAG44_09535  amidohydrolase family protein [KO:K12960] [EC:3.5.4.31 3.5.4.28]
IAG44_32130  amidohydrolase [KO:K12960] [EC:3.5.4.31 3.5.4.28]
IAG44_25005  mtnA; S-methyl-5-thioribose-1-phosphate isomerase [KO:K08963] [EC:5.3.1.23]
IAG44_32160  mtnA; S-methyl-5-thioribose-1-phosphate isomerase [KO:K08963] [EC:5.3.1.23]
IAG44_32165  mtnB; methylthioribulose 1-phosphate dehydratase [KO:K08964] [EC:4.2.1.109]
IAG44_32170  mtnC; acireductone synthase [KO:K09880] [EC:3.1.3.77]
IAG44_32175  cupin domain-containing protein [KO:K08967] [EC:1.13.11.53 1.13.11.54]
IAG44_16295  DNA cytosine methyltransferase [KO:K00558] [EC:2.1.1.37]
IAG44_17935  DNA cytosine methyltransferase [KO:K00558] [EC:2.1.1.37]
IAG44_21220  DNA cytosine methyltransferase [KO:K00558] [EC:2.1.1.37]
IAG44_25735  DNA cytosine methyltransferase [KO:K00558] [EC:2.1.1.37]
IAG44_25740  DNA cytosine methyltransferase [KO:K00558] [EC:2.1.1.37]
IAG44_24945  adenosylhomocysteinase [KO:K01251] [EC:3.13.2.1]
IAG44_30820  1-aminocyclopropane-1-carboxylate deaminase [KO:K01505] [EC:3.5.99.7]
IAG44_13095  pyridoxal-phosphate dependent enzyme [KO:K01505] [EC:3.5.99.7]
IAG44_18265  aspartate kinase [KO:K00928] [EC:2.7.2.4]
IAG44_38345  aspartate kinase [KO:K00928] [EC:2.7.2.4]
IAG44_18260  aspartate-semialdehyde dehydrogenase [KO:K00133] [EC:1.2.1.11]
IAG44_26910  aspartate-semialdehyde dehydrogenase [KO:K00133] [EC:1.2.1.11]
IAG44_12510  homoserine dehydrogenase [KO:K00003] [EC:1.1.1.3]
IAG44_14530  cystathionine gamma-synthase [KO:K01739] [EC:2.5.1.48]
IAG44_32860  aminodeoxychorismate lyase [KO:K00826] [EC:2.6.1.42]
IAG44_01900  aminotransferase class IV family protein [KO:K00826] [EC:2.6.1.42]
IAG44_11420  branched-chain amino acid aminotransferase [KO:K00826] [EC:2.6.1.42]
IAG44_35320  egtA; ergothioneine biosynthesis glutamate--cysteine ligase EgtA [KO:K01919] [EC:6.3.2.2]
IAG44_16160  pyridoxal phosphate-dependent aminotransferase [KO:K00812] [EC:2.6.1.1]
IAG44_19240  sulfurtransferase [KO:K01011] [EC:2.8.1.1 2.8.1.2]
IAG44_09950  sulfurtransferase [KO:K01011] [EC:2.8.1.1 2.8.1.2]
IAG44_00640  aspartate/glutamate racemase family protein [KO:K25316] [EC:5.1.1.10]
IAG44_15285  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
IAG44_02105  L-serine ammonia-lyase [KO:K01752] [EC:4.3.1.17]
IAG44_11730  L-serine ammonia-lyase [KO:K01752] [EC:4.3.1.17]
IAG44_40220  3-phosphoglycerate dehydrogenase [KO:K00058] [EC:1.1.1.95 1.1.1.399]
IAG44_11475  phosphoglycerate dehydrogenase [KO:K00058] [EC:1.1.1.95 1.1.1.399]
IAG44_23085  serC; phosphoserine transaminase [KO:K00831] [EC:2.6.1.52]
IAG44_37590  PLP-dependent cysteine synthase family protein [KO:K22847] [EC:2.8.5.1]
IAG44_03450  PLP-dependent cysteine synthase family protein [KO:K22847] [EC:2.8.5.1]
Compound
C00019  S-Adenosyl-L-methionine
C00021  S-Adenosyl-L-homocysteine
C00022  Pyruvate
C00041  L-Alanine
C00049  L-Aspartate
C00051  Glutathione
C00059  Sulfate
C00065  L-Serine
C00073  L-Methionine
C00094  Sulfite
C00097  L-Cysteine
C00109  2-Oxobutanoate
C00155  L-Homocysteine
C00170  5'-Methylthioadenosine
C00197  3-Phospho-D-glycerate
C00263  L-Homoserine
C00283  Hydrogen sulfide
C00409  Methanethiol
C00441  L-Aspartate 4-semialdehyde
C00491  L-Cystine
C00506  L-Cysteate
C00606  3-Sulfino-L-alanine
C00793  D-Cysteine
C00957  Mercaptopyruvate
C00979  O-Acetyl-L-serine
C01005  O-Phospho-L-serine
C01077  O-Acetyl-L-homoserine
C01118  O-Succinyl-L-homoserine
C01137  S-Adenosylmethioninamine
C01180  4-Methylthio-2-oxobutanoic acid
C01234  1-Aminocyclopropane-1-carboxylate
C01817  L-Homocystine
C01962  Thiocysteine
C02218  Dehydroalanine
C02291  L-Cystathionine
C02356  (S)-2-Aminobutanoate
C02989  L-Methionine S-oxide
C03082  4-Phospho-L-aspartate
C03089  5-Methylthio-D-ribose
C03145  N-Formylmethionine
C03232  3-Phosphonooxypyruvate
C03431  S-Inosyl-L-homocysteine
C03539  S-Ribosyl-L-homocysteine
C04188  S-Methyl-5-thio-D-ribose 1-phosphate
C04582  S-Methyl-5-thio-D-ribulose 1-phosphate
C05324  Nicotianamine
C05524  Aminoacyl-L-methionine
C05526  S-Glutathionyl-L-cysteine
C05527  3-Sulfinylpyruvate
C05528  3-Sulfopyruvate
C05823  3-Mercaptolactate
C05824  S-Sulfo-L-cysteine
C06547  Ethylene
C08276  3-(Methylthio)propanoate
C09306  Sulfur dioxide
C11437  1-Deoxy-D-xylulose 5-phosphate
C11481  HSO3-
C11499  (S)-3-Sulfolactate
C11537  (2R)-3-Sulfolactate
C15606  1,2-Dihydroxy-5-(methylthio)pent-1-en-3-one
C15650  2,3-Diketo-5-methylthiopentyl-1-phosphate
C15651  2-Hydroxy-3-keto-5-methylthiopentenyl-1-phosphate
C18049  N-Acyl-L-homoserine lactone
C19787  5'-S-Methyl-5'-thioinosine
C21015  gamma-L-Glutamyl-L-2-aminobutyrate
C21016  Ophthalmate
C22359  S-Methyl-1-thio-D-xylulose 5-phosphate
Reference
  Authors
Sekowska A, Denervaud V, Ashida H, Michoud K, Haas D, Yokota A, Danchin A
  Title
Bacterial variations on the methionine salvage pathway.
  Journal
BMC Microbiol 4:9 (2004)
DOI:10.1186/1471-2180-4-9
Reference
  Authors
Ashida H, Saito Y, Kojima C, Kobayashi K, Ogasawara N, Yokota A.
  Title
A functional link between RuBisCO-like protein of Bacillus and photosynthetic RuBisCO.
  Journal
Science 302:286-90 (2003)
DOI:10.1126/science.1086997
Reference
  Authors
Sekowska A, Danchin A.
  Title
The methionine salvage pathway in Bacillus subtilis.
  Journal
BMC Microbiol 2:8 (2002)
DOI:10.1186/1471-2180-2-8
Reference
  Authors
Berger BJ, English S, Chan G, Knodel MH.
  Title
Methionine regeneration and aminotransferases in Bacillus subtilis, Bacillus cereus, and Bacillus anthracis.
  Journal
J Bacteriol 185:2418-31 (2003)
DOI:10.1128/JB.185.8.2418-2431.2003
Reference
  Authors
Goyer A, Collakova E, Shachar-Hill Y, Hanson AD
  Title
Functional characterization of a methionine gamma-lyase in Arabidopsis and its implication in an alternative to the reverse trans-sulfuration pathway.
  Journal
Plant Cell Physiol 48:232-42 (2007)
DOI:10.1093/pcp/pcl055
Reference
  Authors
Rebeille F, Jabrin S, Bligny R, Loizeau K, Gambonnet B, Van Wilder V, Douce R, Ravanel S
  Title
Methionine catabolism in Arabidopsis cells is initiated by a gamma-cleavage process and leads to S-methylcysteine and isoleucine syntheses.
  Journal
Proc Natl Acad Sci U S A 103:15687-92 (2006)
DOI:10.1073/pnas.0606195103
Reference
  Authors
Pirkov I, Norbeck J, Gustafsson L, Albers E
  Title
A complete inventory of all enzymes in the eukaryotic methionine salvage pathway.
  Journal
FEBS J 275:4111-20 (2008)
DOI:10.1111/j.1742-4658.2008.06552.x
Reference
  Authors
Ashida H, Saito Y, Kojima C, Yokota A
  Title
Enzymatic characterization of 5-methylthioribulose-1-phosphate dehydratase of the methionine salvage pathway in Bacillus subtilis.
  Journal
Biosci Biotechnol Biochem 72:959-67 (2008)
DOI:10.1271/bbb.70651
Reference
  Authors
Kitabatake M, So MW, Tumbula DL, Soll D
  Title
Cysteine biosynthesis pathway in the archaeon Methanosarcina barkeri encoded by acquired bacterial genes?
  Journal
J Bacteriol 182:143-5 (2000)
DOI:10.1128/JB.182.1.143-145.2000
Reference
  Authors
Mino K, Ishikawa K
  Title
Characterization of a novel thermostable O-acetylserine sulfhydrylase from Aeropyrum pernix K1.
  Journal
J Bacteriol 185:2277-84 (2003)
DOI:10.1128/JB.185.7.2277-2284.2003
Reference
  Authors
Tanabe S
  Title
Development of assay methods for endogenous inorganic sulfur compounds and sulfurtransferases and evaluation of the physiological functions of bound sulfur.
  Journal
Yakugaku Zasshi 128:881-900 (2008)
DOI:10.1248/yakushi.128.881
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Gutierrez JA, Crowder T, Rinaldo-Matthis A, Ho MC, Almo SC, Schramm VL
  Title
Transition state analogs of 5'-methylthioadenosine nucleosidase disrupt quorum sensing.
  Journal
Nat Chem Biol 5:251-7 (2009)
DOI:10.1038/nchembio.153
Related
pathway
sroi00010  Glycolysis / Gluconeogenesis
sroi00250  Alanine, aspartate and glutamate metabolism
sroi00260  Glycine, serine and threonine metabolism
sroi00290  Valine, leucine and isoleucine biosynthesis
sroi00430  Taurine and hypotaurine metabolism
sroi00480  Glutathione metabolism
sroi00620  Pyruvate metabolism
sroi00640  Propanoate metabolism
sroi00770  Pantothenate and CoA biosynthesis
sroi00900  Terpenoid backbone biosynthesis
sroi00920  Sulfur metabolism
KO pathway
ko00270   
LinkDB

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