KEGG   PATHWAY: srr00020
Entry
srr00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Serratia plymuthica AS9
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
srr00020  Citrate cycle (TCA cycle)
srr00020

Module
srr_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:srr00020]
srr_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:srr00020]
srr_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:srr00020]
srr_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:srr00020]
srr_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:srr00020]
Other DBs
GO: 0006099
Organism
Serratia plymuthica AS9 [GN:srr]
Gene
SerAS9_1234  citrate synthase I [KO:K01647] [EC:2.3.3.1]
SerAS9_4249  2-methylcitrate synthase/citrate synthase II [KO:K01659] [EC:2.3.3.5]
SerAS9_2649  aconitate hydratase 1 [KO:K27802] [EC:4.2.1.3 4.2.1.99]
SerAS9_4211  aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
SerAS9_1976  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
SerAS9_1239  2-oxoglutarate dehydrogenase, E1 subunit [KO:K00164] [EC:1.2.4.2]
SerAS9_1240  2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
SerAS9_3300  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
SerAS9_4212  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
SerAS9_4871  Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
SerAS9_1242  succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
SerAS9_1241  Succinyl-CoA ligase (ADP-forming) subunit beta [KO:K01903] [EC:6.2.1.5]
SerAS9_1237  succinate dehydrogenase or fumarate reductase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
SerAS9_1238  succinate dehydrogenase and fumarate reductase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
SerAS9_1235  succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
SerAS9_1236  succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
SerAS9_0358  fumarate reductase, flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
SerAS9_0357  succinate dehydrogenase and fumarate reductase iron-sulfur protein [KO:K00245] [EC:1.3.5.1]
SerAS9_0356  Fumarate reductase subunit C [KO:K00246]
SerAS9_0355  Fumarate reductase subunit D [KO:K00247]
SerAS9_4225  hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit [KO:K01676] [EC:4.2.1.2]
SerAS9_2226  Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
SerAS9_0409  Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
SerAS9_1495  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
SerAS9_4709  Phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
SerAS9_2039  Phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
SerAS9_2419  2-oxo-acid dehydrogenase E1 subunit, homodimeric type [KO:K00163] [EC:1.2.4.1]
SerAS9_4214  2-oxo-acid dehydrogenase E1 subunit, homodimeric type [KO:K00163] [EC:1.2.4.1]
SerAS9_2418  Dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
SerAS9_3301  catalytic domain-containing protein of components of various dehydrogenase complexes [KO:K00627] [EC:2.3.1.12]
SerAS9_4213  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
SerAS9_2599  pyruvate ferredoxin/flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
srr00010  Glycolysis / Gluconeogenesis
srr00053  Ascorbate and aldarate metabolism
srr00061  Fatty acid biosynthesis
srr00071  Fatty acid degradation
srr00190  Oxidative phosphorylation
srr00220  Arginine biosynthesis
srr00250  Alanine, aspartate and glutamate metabolism
srr00280  Valine, leucine and isoleucine degradation
srr00350  Tyrosine metabolism
srr00470  D-Amino acid metabolism
srr00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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