KEGG   PATHWAY: svs00030
Entry
svs00030                    Pathway                                
Name
Pentose phosphate pathway - Setaria viridis (green foxtail)
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
svs00030  Pentose phosphate pathway
svs00030

Module
svs_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:svs00030]
svs_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:svs00030]
svs_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:svs00030]
svs_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:svs00030]
Other DBs
GO: 0006098
Organism
Setaria viridis (green foxtail) [GN:svs]
Gene
117836241  glucose-6-phosphate isomerase, cytosolic [KO:K01810] [EC:5.3.1.9]
117843611  glucose-6-phosphate isomerase 1, chloroplastic [KO:K01810] [EC:5.3.1.9]
117839537  glucose-6-phosphate 1-dehydrogenase, chloroplastic-like isoform X1 [KO:K00036] [EC:1.1.1.49 1.1.1.363]
117837487  inactive glucose-6-phosphate 1-dehydrogenase 4, chloroplastic [KO:K00036] [EC:1.1.1.49 1.1.1.363]
117860511  glucose-6-phosphate 1-dehydrogenase, cytoplasmic isoform-like [KO:K00036] [EC:1.1.1.49 1.1.1.363]
117863960  glucose-6-phosphate 1-dehydrogenase 2, chloroplastic-like [KO:K00036] [EC:1.1.1.49 1.1.1.363]
117864245  glucose-6-phosphate 1-dehydrogenase, cytoplasmic isoform-like [KO:K00036] [EC:1.1.1.49 1.1.1.363]
117845692  probable 6-phosphogluconolactonase 4, chloroplastic [KO:K01057] [EC:3.1.1.31]
117843333  probable 6-phosphogluconolactonase 2 [KO:K01057] [EC:3.1.1.31]
117839083  probable 6-phosphogluconolactonase 1 [KO:K01057] [EC:3.1.1.31]
117859682  probable 6-phosphogluconolactonase 3, chloroplastic [KO:K01057] [EC:3.1.1.31]
117833124  6-phosphogluconate dehydrogenase, decarboxylating 2, chloroplastic [KO:K00033] [EC:1.1.1.44 1.1.1.343]
117852099  6-phosphogluconate dehydrogenase, decarboxylating 1-like [KO:K00033] [EC:1.1.1.44 1.1.1.343]
117855629  6-phosphogluconate dehydrogenase, decarboxylating 1 [KO:K00033] [EC:1.1.1.44 1.1.1.343]
117837357  ribulose-phosphate 3-epimerase, chloroplastic [KO:K01783] [EC:5.1.3.1]
117843628  ribulose-phosphate 3-epimerase, cytoplasmic isoform [KO:K01783] [EC:5.1.3.1]
117852393  transketolase, chloroplastic [KO:K00615] [EC:2.2.1.1]
117853300  transketolase, chloroplastic-like isoform X1 [KO:K00615] [EC:2.2.1.1]
117856847  transketolase, chloroplastic-like [KO:K00615] [EC:2.2.1.1]
117861379  transaldolase isoform X1 [KO:K00616] [EC:2.2.1.2]
117857288  transaldolase isoform X1 [KO:K00616] [EC:2.2.1.2]
117843523  probable ribose-5-phosphate isomerase 3, chloroplastic [KO:K01807] [EC:5.3.1.6]
117838367  probable ribose-5-phosphate isomerase 4, chloroplastic [KO:K01807] [EC:5.3.1.6]
117865872  probable ribose-5-phosphate isomerase 2 [KO:K01807] [EC:5.3.1.6]
117849450  probable ribose-5-phosphate isomerase 1 [KO:K01807] [EC:5.3.1.6]
117857184  ribokinase [KO:K00852] [EC:2.7.1.15]
117838068  phosphoglucomutase, cytoplasmic 2 [KO:K01835] [EC:5.4.2.2]
117838479  phosphoglucomutase, chloroplastic [KO:K01835] [EC:5.4.2.2]
117840500  ribose-phosphate pyrophosphokinase 1, chloroplastic [KO:K00948] [EC:2.7.6.1]
117853800  ribose-phosphate pyrophosphokinase 2, chloroplastic-like isoform X1 [KO:K00948] [EC:2.7.6.1]
117860497  NADP-dependent glyceraldehyde-3-phosphate dehydrogenase [KO:K00131] [EC:1.2.1.9]
117851873  gluconokinase [KO:K00851] [EC:2.7.1.12]
117833916  fructose-bisphosphate aldolase, chloroplastic-like [KO:K01623] [EC:4.1.2.13]
117863190  fructose-bisphosphate aldolase, chloroplastic [KO:K01623] [EC:4.1.2.13]
117852177  fructose-bisphosphate aldolase 5, cytosolic-like [KO:K01623] [EC:4.1.2.13]
117854880  fructose-bisphosphate aldolase 3, chloroplastic [KO:K01623] [EC:4.1.2.13]
117857168  fructose-bisphosphate aldolase 1, cytoplasmic-like [KO:K01623] [EC:4.1.2.13]
117857465  fructose-bisphosphate aldolase 1, cytoplasmic [KO:K01623] [EC:4.1.2.13]
117848483  fructose-1,6-bisphosphatase, cytosolic-like [KO:K03841] [EC:3.1.3.11]
117838929  fructose-1,6-bisphosphatase, chloroplastic [KO:K03841] [EC:3.1.3.11]
117852288  fructose-1,6-bisphosphatase, chloroplastic [KO:K03841] [EC:3.1.3.11]
117858559  fructose-1,6-bisphosphatase, cytosolic [KO:K03841] [EC:3.1.3.11]
117847903  ATP-dependent 6-phosphofructokinase 6-like [KO:K00850] [EC:2.7.1.11]
117841992  ATP-dependent 6-phosphofructokinase 5, chloroplastic-like [KO:K00850] [EC:2.7.1.11]
117838571  ATP-dependent 6-phosphofructokinase 5, chloroplastic-like [KO:K00850] [EC:2.7.1.11]
117861651  ATP-dependent 6-phosphofructokinase 5, chloroplastic-like [KO:K00850] [EC:2.7.1.11]
117850201  ATP-dependent 6-phosphofructokinase 6-like isoform X1 [KO:K00850] [EC:2.7.1.11]
117865850  ATP-dependent 6-phosphofructokinase 2 [KO:K00850] [EC:2.7.1.11]
117853746  ATP-dependent 6-phosphofructokinase 7-like [KO:K00850] [EC:2.7.1.11]
117857531  ATP-dependent 6-phosphofructokinase 6-like [KO:K00850] [EC:2.7.1.11]
117857627  ATP-dependent 6-phosphofructokinase 6-like isoform X1 [KO:K00850] [EC:2.7.1.11]
117835598  pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha-like [KO:K00895] [EC:2.7.1.90]
117837444  pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta-like [KO:K00895] [EC:2.7.1.90]
117845380  pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha-like [KO:K00895] [EC:2.7.1.90]
117860440  pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha-like [KO:K00895] [EC:2.7.1.90]
117853087  pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta-like [KO:K00895] [EC:2.7.1.90]
117853801  pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha-like isoform X1 [KO:K00895] [EC:2.7.1.90]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
svs00010  Glycolysis / Gluconeogenesis
svs00040  Pentose and glucuronate interconversions
svs00052  Galactose metabolism
svs00230  Purine metabolism
svs00240  Pyrimidine metabolism
svs00340  Histidine metabolism
svs00630  Glyoxylate and dicarboxylate metabolism
svs00750  Vitamin B6 metabolism
KO pathway
ko00030   
LinkDB

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