KEGG   PATHWAY: tab00270
Entry
tab00270                    Pathway                                
Name
Cysteine and methionine metabolism - Tumebacillus algifaecis
Description
Cysteine and methionine are sulfur-containing amino acids. Cysteine is synthesized from serine through different pathways in different organism groups. In bacteria and plants, cysteine is converted from serine (via acetylserine) by transfer of hydrogen sulfide [MD:M00021]. In animals, methionine-derived homocysteine is used as sulfur source and its condensation product with serine (cystathionine) is converted to cysteine [MD:M00338]. Cysteine is metabolized to pyruvate in multiple routes. Methionine is an essential amino acid, which animals cannot synthesize. In bacteria and plants, methionine is synthesized from aspartate [MD:M00017]. S-Adenosylmethionine (SAM), synthesized from methionine and ATP, is a methyl group donor in many important transfer reactions including DNA methylation for regulation of gene expression. SAM may also be used to regenerate methionine in the methionine salvage pathway [MD:M00034].
Class
Metabolism; Amino acid metabolism
Pathway map
tab00270  Cysteine and methionine metabolism
tab00270

Module
tab_M00017  Methionine biosynthesis, aspartate => homoserine => methionine [PATH:tab00270]
tab_M00021  Cysteine biosynthesis, serine => cysteine [PATH:tab00270]
tab_M00034  Methionine salvage pathway [PATH:tab00270]
Other DBs
GO: 0006534 0006555
Organism
Tumebacillus algifaecis [GN:tab]
Gene
CIG75_19840  cysE; serine O-acetyltransferase [KO:K00640] [EC:2.3.1.30]
CIG75_09095  cysK; cysteine synthase A [KO:K01738] [EC:2.5.1.47]
CIG75_20110  cysK; cysteine synthase A [KO:K01738] [EC:2.5.1.47]
CIG75_09300  cystathionine gamma-synthase [KO:K01760] [EC:4.4.1.13]
CIG75_06785  metH; methionine synthase [KO:K00548] [EC:2.1.1.13]
CIG75_04095  bifunctional homocysteine S-methyltransferase/methylenetetrahydrofolate reductase [KO:K24042] [EC:2.1.1.13 1.5.1.54]
CIG75_02205  methionine adenosyltransferase [KO:K00789] [EC:2.5.1.6]
CIG75_16180  adenosylmethionine decarboxylase [KO:K01611] [EC:4.1.1.50]
CIG75_05845  S-adenosylmethionine decarboxylase proenzyme [KO:K01611] [EC:4.1.1.50]
CIG75_01435  spermidine synthase [KO:K00797] [EC:2.5.1.16]
CIG75_13200  hypothetical protein [KO:K05810] [EC:2.4.2.1 2.4.2.28 3.5.4.4]
CIG75_03635  N-ethylammeline chlorohydrolase [KO:K12960] [EC:3.5.4.31 3.5.4.28]
CIG75_09965  N-ethylammeline chlorohydrolase [KO:K12960] [EC:3.5.4.31 3.5.4.28]
CIG75_09950  mtnP; S-methyl-5'-thioadenosine phosphorylase [KO:K19696] [EC:2.4.2.44]
CIG75_09955  mtnA; S-methyl-5-thioribose-1-phosphate isomerase [KO:K08963] [EC:5.3.1.23]
CIG75_15770  mtnB; methylthioribulose 1-phosphate dehydratase [KO:K08964] [EC:4.2.1.109]
CIG75_15780  2,3-diketo-5-methylthiopentyl-1-phosphate enolase [KO:K08965] [EC:5.3.2.5]
CIG75_15775  2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase [KO:K08966] [EC:3.1.3.87]
CIG75_15765  acireductone dioxygenase [KO:K08967] [EC:1.13.11.53 1.13.11.54]
CIG75_15785  LL-diaminopimelate aminotransferase [KO:K08969] [EC:2.6.1.117]
CIG75_07365  megL; methionine gamma-lyase [KO:K01761] [EC:4.4.1.11]
CIG75_15095  methionine gamma-lyase [KO:K01761] [EC:4.4.1.11]
CIG75_15900  histidine kinase [KO:K08968] [EC:1.8.4.14]
CIG75_12825  DNA (cytosine-5-)-methyltransferase [KO:K00558] [EC:2.1.1.37]
CIG75_07265  DNA (cytosine-5-)-methyltransferase [KO:K00558] [EC:2.1.1.37]
CIG75_03630  transcriptional regulator [KO:K17462] [EC:2.1.1.-]
CIG75_17785  adenosylhomocysteinase [KO:K01251] [EC:3.13.2.1]
CIG75_07720  aspartate kinase [KO:K00928] [EC:2.7.2.4]
CIG75_11720  aspartate kinase [KO:K00928] [EC:2.7.2.4]
CIG75_11725  aspartate-semialdehyde dehydrogenase [KO:K00133] [EC:1.2.1.11]
CIG75_07735  hypothetical protein [KO:K00003] [EC:1.1.1.3]
CIG75_07730  homoserine O-acetyltransferase [KO:K00641] [EC:2.3.1.31 2.3.1.46]
CIG75_09295  cystathionine gamma-synthase [KO:K01739] [EC:2.5.1.48]
CIG75_14485  hypothetical protein [KO:K00826] [EC:2.6.1.42]
CIG75_01425  aspartate aminotransferase [KO:K00812] [EC:2.6.1.1]
CIG75_01370  sulfurtransferase [KO:K01011] [EC:2.8.1.1 2.8.1.2]
CIG75_05585  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
CIG75_12445  sdaAA; L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha [KO:K01752] [EC:4.3.1.17]
CIG75_12450  sdaAB; L-serine ammonia-lyase, iron-sulfur-dependent, subunit beta [KO:K01752] [EC:4.3.1.17]
CIG75_03435  pyridoxal-5'-phosphate-dependent protein [KO:K22847] [EC:2.8.5.1]
CIG75_03440  hypothetical protein [KO:K22847] [EC:2.8.5.1]
Compound
C00019  S-Adenosyl-L-methionine
C00021  S-Adenosyl-L-homocysteine
C00022  Pyruvate
C00041  L-Alanine
C00049  L-Aspartate
C00051  Glutathione
C00059  Sulfate
C00065  L-Serine
C00073  L-Methionine
C00094  Sulfite
C00097  L-Cysteine
C00109  2-Oxobutanoate
C00155  L-Homocysteine
C00170  5'-Methylthioadenosine
C00197  3-Phospho-D-glycerate
C00263  L-Homoserine
C00283  Hydrogen sulfide
C00409  Methanethiol
C00441  L-Aspartate 4-semialdehyde
C00491  L-Cystine
C00506  L-Cysteate
C00606  3-Sulfino-L-alanine
C00793  D-Cysteine
C00957  Mercaptopyruvate
C00979  O-Acetyl-L-serine
C01005  O-Phospho-L-serine
C01077  O-Acetyl-L-homoserine
C01118  O-Succinyl-L-homoserine
C01137  S-Adenosylmethioninamine
C01180  4-Methylthio-2-oxobutanoic acid
C01234  1-Aminocyclopropane-1-carboxylate
C01817  L-Homocystine
C01962  Thiocysteine
C02218  Dehydroalanine
C02291  L-Cystathionine
C02356  (S)-2-Aminobutanoate
C02989  L-Methionine S-oxide
C03082  4-Phospho-L-aspartate
C03089  5-Methylthio-D-ribose
C03145  N-Formylmethionine
C03232  3-Phosphonooxypyruvate
C03431  S-Inosyl-L-homocysteine
C03539  S-Ribosyl-L-homocysteine
C04188  S-Methyl-5-thio-D-ribose 1-phosphate
C04582  S-Methyl-5-thio-D-ribulose 1-phosphate
C05324  Nicotianamine
C05524  Aminoacyl-L-methionine
C05526  S-Glutathionyl-L-cysteine
C05527  3-Sulfinylpyruvate
C05528  3-Sulfopyruvate
C05823  3-Mercaptolactate
C05824  S-Sulfo-L-cysteine
C06547  Ethylene
C08276  3-(Methylthio)propanoate
C09306  Sulfur dioxide
C11437  1-Deoxy-D-xylulose 5-phosphate
C11481  HSO3-
C11499  (S)-3-Sulfolactate
C11537  (2R)-3-Sulfolactate
C15606  1,2-Dihydroxy-5-(methylthio)pent-1-en-3-one
C15650  2,3-Diketo-5-methylthiopentyl-1-phosphate
C15651  2-Hydroxy-3-keto-5-methylthiopentenyl-1-phosphate
C18049  N-Acyl-L-homoserine lactone
C19787  5'-S-Methyl-5'-thioinosine
C21015  gamma-L-Glutamyl-L-2-aminobutyrate
C21016  Ophthalmate
C22359  S-Methyl-1-thio-D-xylulose 5-phosphate
Reference
  Authors
Sekowska A, Denervaud V, Ashida H, Michoud K, Haas D, Yokota A, Danchin A
  Title
Bacterial variations on the methionine salvage pathway.
  Journal
BMC Microbiol 4:9 (2004)
DOI:10.1186/1471-2180-4-9
Reference
  Authors
Ashida H, Saito Y, Kojima C, Kobayashi K, Ogasawara N, Yokota A.
  Title
A functional link between RuBisCO-like protein of Bacillus and photosynthetic RuBisCO.
  Journal
Science 302:286-90 (2003)
DOI:10.1126/science.1086997
Reference
  Authors
Sekowska A, Danchin A.
  Title
The methionine salvage pathway in Bacillus subtilis.
  Journal
BMC Microbiol 2:8 (2002)
DOI:10.1186/1471-2180-2-8
Reference
  Authors
Berger BJ, English S, Chan G, Knodel MH.
  Title
Methionine regeneration and aminotransferases in Bacillus subtilis, Bacillus cereus, and Bacillus anthracis.
  Journal
J Bacteriol 185:2418-31 (2003)
DOI:10.1128/JB.185.8.2418-2431.2003
Reference
  Authors
Goyer A, Collakova E, Shachar-Hill Y, Hanson AD
  Title
Functional characterization of a methionine gamma-lyase in Arabidopsis and its implication in an alternative to the reverse trans-sulfuration pathway.
  Journal
Plant Cell Physiol 48:232-42 (2007)
DOI:10.1093/pcp/pcl055
Reference
  Authors
Rebeille F, Jabrin S, Bligny R, Loizeau K, Gambonnet B, Van Wilder V, Douce R, Ravanel S
  Title
Methionine catabolism in Arabidopsis cells is initiated by a gamma-cleavage process and leads to S-methylcysteine and isoleucine syntheses.
  Journal
Proc Natl Acad Sci U S A 103:15687-92 (2006)
DOI:10.1073/pnas.0606195103
Reference
  Authors
Pirkov I, Norbeck J, Gustafsson L, Albers E
  Title
A complete inventory of all enzymes in the eukaryotic methionine salvage pathway.
  Journal
FEBS J 275:4111-20 (2008)
DOI:10.1111/j.1742-4658.2008.06552.x
Reference
  Authors
Ashida H, Saito Y, Kojima C, Yokota A
  Title
Enzymatic characterization of 5-methylthioribulose-1-phosphate dehydratase of the methionine salvage pathway in Bacillus subtilis.
  Journal
Biosci Biotechnol Biochem 72:959-67 (2008)
DOI:10.1271/bbb.70651
Reference
  Authors
Kitabatake M, So MW, Tumbula DL, Soll D
  Title
Cysteine biosynthesis pathway in the archaeon Methanosarcina barkeri encoded by acquired bacterial genes?
  Journal
J Bacteriol 182:143-5 (2000)
DOI:10.1128/JB.182.1.143-145.2000
Reference
  Authors
Mino K, Ishikawa K
  Title
Characterization of a novel thermostable O-acetylserine sulfhydrylase from Aeropyrum pernix K1.
  Journal
J Bacteriol 185:2277-84 (2003)
DOI:10.1128/JB.185.7.2277-2284.2003
Reference
  Authors
Tanabe S
  Title
Development of assay methods for endogenous inorganic sulfur compounds and sulfurtransferases and evaluation of the physiological functions of bound sulfur.
  Journal
Yakugaku Zasshi 128:881-900 (2008)
DOI:10.1248/yakushi.128.881
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Gutierrez JA, Crowder T, Rinaldo-Matthis A, Ho MC, Almo SC, Schramm VL
  Title
Transition state analogs of 5'-methylthioadenosine nucleosidase disrupt quorum sensing.
  Journal
Nat Chem Biol 5:251-7 (2009)
DOI:10.1038/nchembio.153
Related
pathway
tab00010  Glycolysis / Gluconeogenesis
tab00250  Alanine, aspartate and glutamate metabolism
tab00260  Glycine, serine and threonine metabolism
tab00290  Valine, leucine and isoleucine biosynthesis
tab00430  Taurine and hypotaurine metabolism
tab00480  Glutathione metabolism
tab00620  Pyruvate metabolism
tab00640  Propanoate metabolism
tab00770  Pantothenate and CoA biosynthesis
tab00900  Terpenoid backbone biosynthesis
tab00920  Sulfur metabolism
KO pathway
ko00270   
LinkDB

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