KEGG   PATHWAY: tpal03008
Entry
tpal03008                   Pathway                                
Name
Ribosome biogenesis in eukaryotes - Thrips palmi (melon thrips)
Description
Ribosomes are the cellular factories responsible for making proteins. In eukaryotes, ribosome biogenesis involves the production and correct assembly of four rRNAs and about 80 ribosomal proteins. It requires hundreds of factors not present in the mature particle. In the absence of these proteins, ribosome biogenesis is stalled and cell growth is terminated even under optimal growth conditions. The primary pre-rRNA transcript is assembled into the 90S pre-ribosome, which contains both 40S and 60S assembly factors. Within this complex, the pre-rRNA is cleaved. pre-60S ribosomes are subjected to several sequential processing steps in the nucleoplasm involving numerous assembly intermediates before it is exported to the cytoplasm and matured into the 60S ribosomal subunit. The pre-40S ribosome is matured to the small ribosomal subunit in the cytoplasm by cleavage.
Class
Genetic Information Processing; Translation
Pathway map
tpal03008  Ribosome biogenesis in eukaryotes
tpal03008

Organism
Thrips palmi (melon thrips) [GN:tpal]
Gene
117641578  casein kinase II subunit beta-like [KO:K03115]
117650299  casein kinase II subunit beta [KO:K03115]
117642687  casein kinase II subunit alpha isoform X1 [KO:K03097] [EC:2.7.11.1]
117647628  nucleolar protein 6 isoform X1 [KO:K14544]
117642230  ribosomal RNA-processing protein 7 homolog A [KO:K14545]
117646957  WD repeat-containing protein 43 [KO:K14546]
117650469  U3 small nucleolar RNA-associated protein 4 homolog [KO:K14548]
117646630  U3 small nucleolar RNA-associated protein 15 homolog [KO:K14549]
117652096  HEAT repeat-containing protein 1 [KO:K14550]
117650028  WD repeat-containing protein 75 [KO:K14552]
117640659  U3 small nucleolar RNA-associated protein 18 homolog [KO:K14553]
117650232  WD repeat-containing protein 36 [KO:K14554]
117640110  transducin beta-like protein 3 [KO:K14555]
117650297  WD repeat-containing protein 3 [KO:K14556]
117651267  U3 small nucleolar RNA-associated protein 6 homolog [KO:K14557]
117644510  periodic tryptophan protein 2 homolog [KO:K14558]
117647113  U3 small nucleolar ribonucleoprotein protein MPP10 [KO:K14559]
117641735  U3 small nucleolar ribonucleoprotein protein IMP3 [KO:K14560]
117639105  U3 small nucleolar ribonucleoprotein protein IMP4 [KO:K14561]
117643061  rRNA 2'-O-methyltransferase fibrillarin [KO:K14563] [EC:2.1.1.-]
117653421  nucleolar protein 56 [KO:K14564]
117640298  nucleolar protein 58 [KO:K14565]
117650260  NHP2-like protein 1 homolog [KO:K12845]
117643148  H/ACA ribonucleoprotein complex subunit 4 [KO:K11131] [EC:5.4.99.-]
117653902  H/ACA ribonucleoprotein complex subunit 2-like protein [KO:K11129]
117646812  probable H/ACA ribonucleoprotein complex subunit 1 [KO:K11128]
117639908  H/ACA ribonucleoprotein complex subunit 3 [KO:K11130]
117654142  rRNA-processing protein FCF1 homolog [KO:K14566]
117646691  U3 small nucleolar RNA-associated protein 14 homolog A [KO:K14567]
117641315  ribonuclease 3 [KO:K03685] [EC:3.1.26.3]
117654005  ribosomal RNA small subunit methyltransferase NEP1 [KO:K14568] [EC:2.1.1.260]
117643799  ribosome biogenesis protein BMS1 homolog isoform X1 [KO:K14569]
117645512  RNA cytidine acetyltransferase [KO:K14521] [EC:2.3.1.-]
117650345  ribonucleases P/MRP protein subunit POP1 [KO:K01164] [EC:3.1.26.5]
117639062  uncharacterized protein LOC117639062 [KO:K14523] [EC:3.1.26.5]
117642509  ribonuclease P protein subunit p29 [KO:K03538] [EC:3.1.26.5]
117639454  ribonuclease P/MRP protein subunit POP5 [KO:K03537] [EC:3.1.26.5]
117645998  ribonuclease P protein subunit p25-like protein [KO:K14525] [EC:3.1.26.5]
117639523  ribonuclease P protein subunit p30 [KO:K03539] [EC:3.1.26.5]
117651503  RNA exonuclease 1 homolog isoform X1 [KO:K14570] [EC:3.1.-.-]
117644907  RNA exonuclease 1 homolog [KO:K14570] [EC:3.1.-.-]
117650257  small RNA degrading nuclease 5 [KO:K14570] [EC:3.1.-.-]
117652281  probable oligoribonuclease [KO:K13288] [EC:3.1.-.-]
117653270  5'-3' exoribonuclease 1 [KO:K12618] [EC:3.1.13.-]
117640825  5'-3' exoribonuclease 2 homolog [KO:K12619] [EC:3.1.13.-]
117646485  nucleolar GTP-binding protein 1 [KO:K06943]
117639341  nucleolar GTP-binding protein 2 [KO:K14537]
117654107  guanine nucleotide-binding protein-like 3 homolog [KO:K14538]
117653272  nuclear valosin-containing protein-like [KO:K14571]
117652202  midasin [KO:K14572]
117645173  RNA-binding protein 28 [KO:K14573]
117639380  RNA-binding protein NOB1 [KO:K11883]
117645320  GTP-binding nuclear protein Ran [KO:K07936]
117639032  exportin-1 [KO:K14290]
117654347  60S ribosomal export protein NMD3 [KO:K07562]
117641971  nuclear RNA export factor 1-like [KO:K14284]
117653323  NTF2-related export protein [KO:K14285]
117651618  eukaryotic translation initiation factor 6 [KO:K03264]
117645063  ribosome maturation protein SBDS [KO:K14574]
117644554  elongation factor-like GTPase 1 isoform X1 [KO:K14536] [EC:3.6.5.-]
117653971  large subunit GTPase 1 homolog [KO:K14539] [EC:3.6.1.-]
117654179  ATPase family protein 2 homolog [KO:K14575]
117646725  adenylate kinase isoenzyme 6 [KO:K18532] [EC:2.7.4.3]
117650349  serine/threonine-protein kinase RIO1 [KO:K07178] [EC:2.7.11.1]
117645542  serine/threonine-protein kinase RIO2 [KO:K07179] [EC:2.7.11.1]
Reference
  Authors
Freed EF, Bleichert F, Dutca LM, Baserga SJ
  Title
When ribosomes go bad: diseases of ribosome biogenesis.
  Journal
Mol Biosyst 6:481-93 (2010)
DOI:10.1039/b919670f
Reference
  Authors
Perez-Fernandez J, Roman A, De Las Rivas J, Bustelo XR, Dosil M
  Title
The 90S preribosome is a multimodular structure that is assembled through a hierarchical mechanism.
  Journal
Mol Cell Biol 27:5414-29 (2007)
DOI:10.1128/MCB.00380-07
Reference
  Authors
Strunk BS, Karbstein K
  Title
Powering through ribosome assembly.
  Journal
RNA 15:2083-104 (2009)
DOI:10.1261/rna.1792109
Reference
  Authors
Granneman S, Baserga SJ
  Title
Ribosome biogenesis: of knobs and RNA processing.
  Journal
Exp Cell Res 296:43-50 (2004)
DOI:10.1016/j.yexcr.2004.03.016
Reference
  Authors
Kressler D, Hurt E, Bassler J
  Title
Driving ribosome assembly.
  Journal
Biochim Biophys Acta 1803:673-83 (2010)
DOI:10.1016/j.bbamcr.2009.10.009
Related
pathway
tpal03010  Ribosome
KO pathway
ko03008   
LinkDB

DBGET integrated database retrieval system