KEGG   PATHWAY: vri00240
Entry
vri00240                    Pathway                                
Name
Pyrimidine metabolism - Vitis riparia (riverbank grape)
Class
Metabolism; Nucleotide metabolism
Pathway map
vri00240  Pyrimidine metabolism
vri00240

Module
vri_M00046  Pyrimidine degradation, uracil => beta-alanine, thymine => 3-aminoisobutanoate [PATH:vri00240]
vri_M00052  Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:vri00240]
vri_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:vri00240]
vri_M00938  Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:vri00240]
Other DBs
GO: 0006220 0006213
Organism
Vitis riparia (riverbank grape) [GN:vri]
Gene
117916201  carbamoyl-phosphate synthase large chain, chloroplastic [KO:K01955] [EC:6.3.5.5]
117912802  carbamoyl-phosphate synthase small chain, chloroplastic isoform X1 [KO:K01956] [EC:6.3.5.5]
117908509  aspartate carbamoyltransferase 2, chloroplastic [KO:K00609] [EC:2.1.3.2]
117910670  dihydroorotase, mitochondrial-like isoform X1 [KO:K01465] [EC:3.5.2.3]
117923919  dihydroorotate dehydrogenase (quinone), mitochondrial [KO:K00254] [EC:1.3.5.2]
117928825  uridine 5'-monophosphate synthase-like [KO:K13421] [EC:2.4.2.10 4.1.1.23]
117927967  uridine 5'-monophosphate synthase-like [KO:K01591] [EC:4.1.1.23]
117928609  uridine 5'-monophosphate synthase-like isoform X1 [KO:K01591] [EC:4.1.1.23]
117933771  UMP-CMP kinase isoform X1 [KO:K13800] [EC:2.7.4.14]
117931974  UMP-CMP kinase 3-like [KO:K13800] [EC:2.7.4.14]
117932350  UMP-CMP kinase 3-like [KO:K13800] [EC:2.7.4.14]
117932699  UMP-CMP kinase 4-like isoform X1 [KO:K13800] [EC:2.7.4.14]
117912828  uridylate kinase [KO:K09903] [EC:2.7.4.22]
117903978  nucleoside diphosphate kinase 2, chloroplastic [KO:K00940] [EC:2.7.4.6]
117931186  nucleoside diphosphate kinase 3-like [KO:K00940] [EC:2.7.4.6]
117931569  nucleoside diphosphate kinase B [KO:K00940] [EC:2.7.4.6]
117916314  probable apyrase 6 [KO:K01510] [EC:3.6.1.5]
117916678  probable apyrase 6 isoform X1 [KO:K01510] [EC:3.6.1.5]
117914816  apyrase 2-like [KO:K14641] [EC:3.6.1.5]
117925448  ectonucleotide pyrophosphatase/phosphodiesterase family member 3 [KO:K01513] [EC:3.1.4.1 3.6.1.9]
117925880  nudix hydrolase 25 [KO:K26955] [EC:3.6.1.17]
117911319  CTP synthase-like [KO:K01937] [EC:6.3.4.2]
117911666  CTP synthase-like [KO:K01937] [EC:6.3.4.2]
117918677  CTP synthase [KO:K01937] [EC:6.3.4.2]
117919185  CTP synthase 1-like [KO:K01937] [EC:6.3.4.2]
117909646  uridine kinase-like protein 3 [KO:K00876] [EC:2.7.1.48]
117924858  inorganic pyrophosphatase TTM2-like [KO:K00876] [EC:2.7.1.48]
117904508  inorganic pyrophosphatase TTM1 [KO:K00876] [EC:2.7.1.48]
117904945  uridine kinase-like protein 1, chloroplastic isoform X1 [KO:K00876] [EC:2.7.1.48]
117930150  uridine kinase-like protein 5 isoform X1 [KO:K00876] [EC:2.7.1.48]
117930187  uridine kinase-like protein 1, chloroplastic [KO:K00876] [EC:2.7.1.48]
117922413  5'-nucleotidase SurE [KO:K03787] [EC:3.1.3.5 3.1.3.6]
117924900  5'-nucleotidase SurE-like isoform X1 [KO:K03787] [EC:3.1.3.5 3.1.3.6]
117914765  5'-nucleotidase SurE [KO:K03787] [EC:3.1.3.5 3.1.3.6]
117913940  probable uridine nucleosidase 2 [KO:K01240] [EC:3.2.2.3]
117921185  uridine nucleosidase 1 [KO:K01240] [EC:3.2.2.3]
117921172  uracil phosphoribosyltransferase-like [KO:K00761] [EC:2.4.2.9]
117919559  uracil phosphoribosyltransferase isoform X1 [KO:K00761] [EC:2.4.2.9]
117917122  pseudouridine-5'-phosphate glycosidase [KO:K16329] [EC:4.2.1.70]
117929310  7-methylguanosine phosphate-specific 5'-nucleotidase A isoform X1 [KO:K24242] [EC:3.1.3.91]
117924462  cytidine deaminase 1-like [KO:K01489] [EC:3.5.4.5]
117918967  ribonucleoside-diphosphate reductase large subunit [KO:K10807] [EC:1.17.4.1]
117913985  ribonucleoside-diphosphate reductase small chain A [KO:K10808] [EC:1.17.4.1]
117929699  LOW QUALITY PROTEIN: ribonucleoside-diphosphate reductase small chain [KO:K10808] [EC:1.17.4.1]
117913861  dCTP pyrophosphatase 1-like [KO:K16904] [EC:3.6.1.12]
117914944  dCTP pyrophosphatase 1-like [KO:K16904] [EC:3.6.1.12]
117914997  dCTP pyrophosphatase 1-like [KO:K16904] [EC:3.6.1.12]
117904456  dCTP pyrophosphatase 1-like [KO:K16904] [EC:3.6.1.12]
117904771  dCTP pyrophosphatase 1-like [KO:K16904] [EC:3.6.1.12]
117918876  dCTP pyrophosphatase 1-like [KO:K16904] [EC:3.6.1.12]
117924506  5'-deoxynucleotidase HDDC2-like isoform X1 [KO:K07023] [EC:3.1.3.89]
117925584  5'-deoxynucleotidase HDDC2-like [KO:K07023] [EC:3.1.3.89]
117932142  5'-deoxynucleotidase HDDC2-like isoform X1 [KO:K07023] [EC:3.1.3.89]
117932267  5'-deoxynucleotidase HDDC2-like isoform X1 [KO:K07023] [EC:3.1.3.89]
117904301  deoxycytidylate deaminase [KO:K01493] [EC:3.5.4.12]
117930420  thymidylate kinase [KO:K00943] [EC:2.7.4.9]
117915898  deoxyuridine 5'-triphosphate nucleotidohydrolase-like [KO:K01520] [EC:3.6.1.23]
117906500  deoxyuridine 5'-triphosphate nucleotidohydrolase-like [KO:K01520] [EC:3.6.1.23]
117924198  thymidine kinase a-like [KO:K00857] [EC:2.7.1.21]
117926185  thymidine kinase [KO:K00857] [EC:2.7.1.21]
117911438  bifunctional dihydrofolate reductase-thymidylate synthase-like [KO:K13998] [EC:1.5.1.3 2.1.1.45]
117911790  bifunctional dihydrofolate reductase-thymidylate synthase-like [KO:K13998] [EC:1.5.1.3 2.1.1.45]
117906191  putative bifunctional dihydrofolate reductase-thymidylate synthase isoform X1 [KO:K13998] [EC:1.5.1.3 2.1.1.45]
117904210  dihydropyrimidine dehydrogenase (NADP(+)), chloroplastic [KO:K00207] [EC:1.3.1.2]
117916197  dihydropyrimidinase [KO:K01464] [EC:3.5.2.2]
117910752  beta-ureidopropionase-like [KO:K01431] [EC:3.5.1.6]
117908760  beta-ureidopropionase-like [KO:K01431] [EC:3.5.1.6]
Compound
C00015  UDP
C00039  DNA
C00046  RNA
C00055  CMP
C00063  CTP
C00064  L-Glutamine
C00075  UTP
C00086  Urea
C00099  beta-Alanine
C00105  UMP
C00106  Uracil
C00112  CDP
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00169  Carbamoyl phosphate
C00178  Thymine
C00214  Thymidine
C00222  3-Oxopropanoate
C00239  dCMP
C00295  Orotate
C00299  Uridine
C00337  (S)-Dihydroorotate
C00363  dTDP
C00364  dTMP
C00365  dUMP
C00380  Cytosine
C00383  Malonate
C00429  5,6-Dihydrouracil
C00438  N-Carbamoyl-L-aspartate
C00458  dCTP
C00459  dTTP
C00460  dUTP
C00475  Cytidine
C00526  Deoxyuridine
C00672  2-Deoxy-D-ribose 1-phosphate
C00705  dCDP
C00813  Barbiturate
C00881  Deoxycytidine
C00941  3',5'-Cyclic CMP
C01013  3-Hydroxypropanoate
C01103  Orotidine 5'-phosphate
C01168  Pseudouridine 5'-phosphate
C01205  (R)-3-Amino-2-methylpropanoate
C01346  dUDP
C01368  3'-UMP
C01563  Carbamate
C02067  Pseudouridine
C02170  Methylmalonate
C02354  2',3'-Cyclic CMP
C02355  2',3'-Cyclic UMP
C02376  5-Methylcytosine
C02642  3-Ureidopropionate
C03997  5-Hydroxymethyldeoxycytidylate
C05281  5-Methylbarbiturate
C05822  3'-CMP
C06198  P1,P4-Bis(5'-uridyl) tetraphosphate
C11038  2'-Deoxy-5-hydroxymethylcytidine-5'-diphosphate
C11039  2'-Deoxy-5-hydroxymethylcytidine-5'-triphosphate
C15607  3-Oxo-3-ureidopropanoate
C20231  (Z)-3-Ureidoacrylate peracid
C20249  (Z)-3-Peroxyaminoacrylate
C20253  Aminoacrylate
C20254  Ureidoacrylate
C20846  3-Oxo-3-ureidoisobutyrate
C21028  (R)-5,6-Dihydrothymine
C21029  (R)-3-Ureidoisobutyrate
C22509  3',5'-Cyclic UMP
Related
pathway
vri00030  Pentose phosphate pathway
vri00220  Arginine biosynthesis
vri00250  Alanine, aspartate and glutamate metabolism
vri00280  Valine, leucine and isoleucine degradation
vri00410  beta-Alanine metabolism
KO pathway
ko00240   
LinkDB

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