KEGG   PATHWAY: xla03030
Entry
xla03030                    Pathway                                
Name
DNA replication - Xenopus laevis (African clawed frog)
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
xla03030  DNA replication
xla03030

Organism
Xenopus laevis (African clawed frog) [GN:xla]
Gene
100037159  ssbp1.S; single-stranded DNA-binding protein 1-B, mitochondrial [KO:K03111]
397915  ssbp1.L; single-stranded DNA-binding protein 1-A, mitochondrial precursor [KO:K03111]
414644  rnaseh1.S; ribonuclease H1 S homeolog [KO:K03469] [EC:3.1.26.4]
734386  MGC146443.L; uncharacterized protein LOC734386 [KO:K03469] [EC:3.1.26.4]
735129  rnaseh1.L; ribonuclease H1 L homeolog [KO:K03469] [EC:3.1.26.4]
108717167  MGC146443.S; ribonuclease H1-like [KO:K03469] [EC:3.1.26.4]
108708846  rpa1.S; replication protein A 70 kDa DNA-binding subunit-like [KO:K07466]
397937  rpa1.L; replication protein A 70 kDa DNA-binding subunit [KO:K07466]
398425  pcna.L; proliferating cell nuclear antigen L homeolog [KO:K04802]
394328  pcna.S; proliferating cell nuclear antigen [KO:K04802]
378492  dna2.S; DNA replication ATP-dependent helicase/nuclease DNA2 [KO:K10742] [EC:5.6.2.3 3.1.-.-]
394303  fen1.L; flap endonuclease 1-A [KO:K04799] [EC:3.1.-.-]
394311  fen1.S; flap endonuclease 1-B [KO:K04799] [EC:3.1.-.-]
108696916  flap endonuclease 1 [KO:K04799] [EC:3.1.-.-]
397978  lig1.L; DNA ligase 1 [KO:K10747] [EC:6.5.1.1 6.5.1.6 6.5.1.7]
398200  pola1.S; DNA polymerase alpha catalytic subunit [KO:K02320] [EC:2.7.7.7]
446807  pola2.L; polymerase (DNA directed), alpha 2, accessory subunit L homeolog [KO:K02321]
380513  prim1.S; DNA primase subunit 1 S homeolog [KO:K02684] [EC:2.7.7.102]
496363  prim2.S; DNA primase large subunit [KO:K02685]
447518  pold1.L; DNA-directed DNA polymerase delta 1 [KO:K02327] [EC:2.7.7.7]
379793  pold2.L; DNA polymerase delta subunit 2 [KO:K02328]
398707  pold3.L; DNA-directed DNA polymerase delta 3 [KO:K03504]
394427  pole.L; DNA polymerase epsilon catalytic subunit A [KO:K02324] [EC:2.7.7.7]
399116  pole2.L; DNA-directed DNA polymerase epsilon 2 [KO:K02325] [EC:2.7.7.7]
407748  pole3.L; DNA polymerase epsilon subunit 3 [KO:K02326] [EC:2.7.7.7]
779084  pole4.L; DNA-directed DNA polymerase epsilon 4 [KO:K03506] [EC:2.7.7.7]
380451  mcm2.L; DNA replication licensing factor mcm2 [KO:K02540] [EC:5.6.2.3]
108715875  mcm2.S; DNA replication licensing factor mcm2-like isoform X1 [KO:K02540] [EC:5.6.2.3]
379850  zmcm3.L; zygotic DNA replication licensing factor mcm3 [KO:K02541] [EC:5.6.2.3]
397821  mcm3.L; maternal DNA replication licensing factor mcm3 [KO:K02541] [EC:5.6.2.3]
397843  mcm4.L; DNA replication licensing factor mcm4-B [KO:K02212] [EC:5.6.2.3]
373601  mcm4.S; DNA replication licensing factor mcm4-A [KO:K02212] [EC:5.6.2.3]
380587  mcm5.L; DNA replication licensing factor mcm5-A [KO:K02209] [EC:5.6.2.3]
379699  mcm5.S; DNA replication licensing factor mcm5-B [KO:K02209] [EC:5.6.2.3]
380282  mcm6.2.S; zygotic DNA replication licensing factor mcm6-B [KO:K02542] [EC:5.6.2.3]
398071  mcm6.L; maternal DNA replication licensing factor mcm6 [KO:K02542] [EC:5.6.2.3]
394426  mcm6.2.L; zygotic DNA replication licensing factor mcm6-A [KO:K02542] [EC:5.6.2.3]
108705347  maternal DNA replication licensing factor mcm6-like [KO:K02542] [EC:5.6.2.3]
397852  mcm7.S; DNA replication licensing factor mcm7-A [KO:K02210] [EC:5.6.2.3]
380414  mcm7.L; DNA replication licensing factor mcm7-B [KO:K02210] [EC:5.6.2.3]
443819  rpa2.L; replication protein A 32 kDa subunit-A [KO:K10739]
100036853  rpa2.S; replication protein A 32 kDa subunit-B [KO:K10739]
495401  rpa3.L; replication protein A3 L homeolog [KO:K10740]
446650  rpa3.S; replication protein A3 S homeolog [KO:K10740]
100380972  rfc1.L; replication factor C subunit 1 [KO:K10754]
431883  rfc2.L; replication factor C subunit 2 L homeolog [KO:K10755]
398706  rfc4.L; replication factor C subunit 4 L homeolog [KO:K10755]
108709658  replication factor C subunit 2-like [KO:K10755]
380369  rfc5.L; replication factor C subunit 5 L homeolog [KO:K10756]
734626  rfc3.L; replication factor C subunit 3 L homeolog [KO:K10756]
443952  rfc5.S; replication factor C subunit 5 S homeolog [KO:K10756]
443655  rnaseh2a.L; ribonuclease H2 subunit A L homeolog [KO:K10743] [EC:3.1.26.4]
496343  rnaseh2b.L; ribonuclease H2 subunit B [KO:K10744]
108713944  rnaseh2c.L; ribonuclease H2 subunit C [KO:K10745]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   
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