KEGG PATHWAY: yli00270

PATHWAY: yli00270

Entry

yli00270                    Pathway

Name

Cysteine and methionine metabolism - Yarrowia lipolytica

Description

Cysteine and methionine are sulfur-containing amino acids. Cysteine is synthesized from serine through different pathways in different organism groups. In bacteria and plants, cysteine is converted from serine (via acetylserine) by transfer of hydrogen sulfide [MD:M00021]. In animals, methionine-derived homocysteine is used as sulfur source and its condensation product with serine (cystathionine) is converted to cysteine [MD:M00338]. Cysteine is metabolized to pyruvate in multiple routes. Methionine is an essential amino acid, which animals cannot synthesize. In bacteria and plants, methionine is synthesized from aspartate [MD:M00017]. S-Adenosylmethionine (SAM), synthesized from methionine and ATP, is a methyl group donor in many important transfer reactions including DNA methylation for regulation of gene expression. SAM may also be used to regenerate methionine in the methionine salvage pathway [MD:M00034].

Class

Metabolism; Amino acid metabolism

Pathway map

yli00270

Cysteine and methionine metabolism

Module

yli_M00017

Methionine biosynthesis, aspartate => homoserine => methionine [PATH:yli00270]

yli_M00034

Methionine salvage pathway [PATH:yli00270]

yli_M00338

Cysteine biosynthesis, homocysteine + serine => cysteine [PATH:yli00270]

Other DBs

GO:	0006534 0006555

Organism

Yarrowia lipolytica [GN:yli]

Gene

2908185

YALI2_F00279g; Cysteine synthase 1 [KO:K01738] [EC:2.5.1.47]

2912492

YALI2_E00178g; Putative cysteine synthase [KO:K01738] [EC:2.5.1.47]

2910781

YALI2_D00639g; Homocysteine synthase [KO:K17069] [EC:2.5.1.49 2.5.1.47]

2908468

YALI2_F00114g; Cystathionine gamma-lyase [KO:K01758] [EC:4.4.1.1]

2910397

YALI2_D01112g; Cystathionine beta-lyase [KO:K01760] [EC:4.4.1.13]

2912520

YALI2_E00190g; Cystathionine beta-synthase [KO:K01697] [EC:4.2.1.22]

2912845

YALI2_E00259g; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [KO:K00549] [EC:2.1.1.14]

2907639

YALI2_C00794g; S-adenosylmethionine synthase [KO:K00789] [EC:2.5.1.6]

2911812

YALI2_E01361g; S-adenosylmethionine decarboxylase proenzyme [KO:K01611] [EC:4.1.1.50]

2911876

YALI2_F00531g; Spermidine synthase [KO:K00797] [EC:2.5.1.16]

2907414

YALI2_C00820g; S-methyl-5'-thioadenosine phosphorylase [KO:K00772] [EC:2.4.2.28]

2906518

YALI2_A00258g; Methylthioribose-1-phosphate isomerase [KO:K08963] [EC:5.3.1.23]

2909882

YALI2_B00413g; Methylthioribulose-1-phosphate dehydratase [KO:K08964] [EC:4.2.1.109]

2910210

YALI2_D00334g; Enolase-phosphatase E1 [KO:K09880] [EC:3.1.3.77]

2906238

YALI2_A00223g; 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase [KO:K08967] [EC:1.13.11.53 1.13.11.54]

2911847

YALI2_E01347g; Aromatic/aminoadipate aminotransferase 1 [KO:K00838] [EC:2.6.1.57 2.6.1.39 2.6.1.27 2.6.1.5]

2908396

YALI2_E00728g; Free methionine-R-sulfoxide reductase [KO:K08968] [EC:1.8.4.14]

2908635

YALI2_F00746g; Adenosylhomocysteinase [KO:K01251] [EC:3.13.2.1]

2910365

YALI2_D00879g; Aspartokinase [KO:K00928] [EC:2.7.2.4]

2910253

YALI2_D00843g; Aspartate-semialdehyde dehydrogenase [KO:K00133] [EC:1.2.1.11]

2910416

YALI2_D01103g; Homoserine dehydrogenase [KO:K00003] [EC:1.1.1.3]

2907881

YALI2_F00268g; Homoserine kinase [KO:K00872] [EC:2.7.1.39]

2912900

YALI2_E01747g; Homoserine O-acetyltransferase [KO:K00641] [EC:2.3.1.31 2.3.1.46]

2911236

YALI2_D00783g; Putative cystathionine gamma-synthase [KO:K01739] [EC:2.5.1.48]

2910451

YALI2_D01099g; Branched-chain-amino-acid aminotransferase [KO:K00826] [EC:2.6.1.42]

2908911

YALI2_E00628g; Branched-chain-amino-acid aminotransferase AtnH [KO:K00826] [EC:2.6.1.42]

2911465

YALI2_E00604g; Glutamate--cysteine ligase catalytic subunit [KO:K11204] [EC:6.3.2.2]

2907274

YALI2_C00967g; Hypothetical protein [KO:K11205]

2910006

YALI2_B00458g; Glutathione synthetase [KO:K21456] [EC:6.3.2.3]

2908623

YALI2_F00749g; Cysteine dioxygenase [KO:K00456] [EC:1.13.11.20]

2908742

YALI2_E00813g; Aspartate aminotransferase, cytoplasmic [KO:K14454] [EC:2.6.1.1]

2906682

YALI2_B00040g; Aspartate aminotransferase [KO:K14455] [EC:2.6.1.1]

2908766

YALI2_E01047g; Thiosulfate sulfurtransferase [KO:K01011] [EC:2.8.1.1 2.8.1.2]

2910208

YALI2_D00332g; Malate dehydrogenase [KO:K00026] [EC:1.1.1.37]

2911503

YALI2_E01475g; Malate dehydrogenase, cytoplasmic [KO:K00026] [EC:1.1.1.37]

2906629

YALI2_C00759g; Catabolic L-serine/threonine dehydratase [KO:K17989] [EC:4.3.1.17 4.3.1.19]

2912595

YALI2_E01553g; Serine dehydratase-like [KO:K17989] [EC:4.3.1.17 4.3.1.19]

2908991

YALI2_F00781g; D-3-phosphoglycerate dehydrogenase 1 [KO:K00058] [EC:1.1.1.95 1.1.1.399]

2908388

YALI2_F00856g; Phosphoserine aminotransferase [KO:K00831] [EC:2.6.1.52]

Compound

C00019

S-Adenosyl-L-methionine

C00021

S-Adenosyl-L-homocysteine

C00022

Pyruvate

C00041

L-Alanine

C00049

L-Aspartate

C00051

Glutathione

C00059

Sulfate

C00065

L-Serine

C00073

L-Methionine

C00094

Sulfite

C00097

L-Cysteine

C00109

2-Oxobutanoate

C00155

L-Homocysteine

C00170

5'-Methylthioadenosine

C00197

3-Phospho-D-glycerate

C00263

L-Homoserine

C00283

Hydrogen sulfide

C00409

Methanethiol

C00441

L-Aspartate 4-semialdehyde

C00491

L-Cystine

C00506

L-Cysteate

C00606

3-Sulfino-L-alanine

C00793

D-Cysteine

C00957

Mercaptopyruvate

C00979

O-Acetyl-L-serine

C01005

O-Phospho-L-serine

C01077

O-Acetyl-L-homoserine

C01102

O-Phospho-L-homoserine

C01118

O-Succinyl-L-homoserine

C01137

S-Adenosylmethioninamine

C01180

4-Methylthio-2-oxobutanoic acid

C01234

1-Aminocyclopropane-1-carboxylate

C01817

L-Homocystine

C01962

Thiocysteine

C02218

Dehydroalanine

C02291

L-Cystathionine

C02356

(S)-2-Aminobutanoate

C02989

L-Methionine S-oxide

C03082

4-Phospho-L-aspartate

C03089

5-Methylthio-D-ribose

C03145

N-Formylmethionine

C03232

3-Phosphonooxypyruvate

C03431

S-Inosyl-L-homocysteine

C03539

S-Ribosyl-L-homocysteine

C04188

S-Methyl-5-thio-D-ribose 1-phosphate

C04582

S-Methyl-5-thio-D-ribulose 1-phosphate

C05324

Nicotianamine

C05524

Aminoacyl-L-methionine

C05526

S-Glutathionyl-L-cysteine

C05527

3-Sulfinylpyruvate

C05528

3-Sulfopyruvate

C05823

3-Mercaptolactate

C05824

S-Sulfo-L-cysteine

C06547

Ethylene

C08276

3-(Methylthio)propanoate

C09306

Sulfur dioxide

C11437

1-Deoxy-D-xylulose 5-phosphate

C11481

HSO3-

C11499

(S)-3-Sulfolactate

C11537

(2R)-3-Sulfolactate

C15606

1,2-Dihydroxy-5-(methylthio)pent-1-en-3-one

C15650

2,3-Diketo-5-methylthiopentyl-1-phosphate

C15651

2-Hydroxy-3-keto-5-methylthiopentenyl-1-phosphate

C18049

N-Acyl-L-homoserine lactone

C19787

5'-S-Methyl-5'-thioinosine

C21015

gamma-L-Glutamyl-L-2-aminobutyrate

C21016

Ophthalmate

C22359

S-Methyl-1-thio-D-xylulose 5-phosphate

Reference

PMID:15102328

Authors

Sekowska A, Denervaud V, Ashida H, Michoud K, Haas D, Yokota A, Danchin A

Title

Bacterial variations on the methionine salvage pathway.

Journal

BMC Microbiol 4:9 (2004)
DOI:10.1186/1471-2180-4-9

Reference

PMID:14551435

Authors

Ashida H, Saito Y, Kojima C, Kobayashi K, Ogasawara N, Yokota A.

Title

A functional link between RuBisCO-like protein of Bacillus and photosynthetic RuBisCO.

Journal

Science 302:286-90 (2003)
DOI:10.1126/science.1086997

Reference

PMID:12022921

Authors

Sekowska A, Danchin A.

Title

The methionine salvage pathway in Bacillus subtilis.

Journal

BMC Microbiol 2:8 (2002)
DOI:10.1186/1471-2180-2-8

Reference

PMID:12670965

Authors

Berger BJ, English S, Chan G, Knodel MH.

Title

Methionine regeneration and aminotransferases in Bacillus subtilis, Bacillus cereus, and Bacillus anthracis.

Journal

J Bacteriol 185:2418-31 (2003)
DOI:10.1128/JB.185.8.2418-2431.2003

Reference

PMID:17169919

Authors

Goyer A, Collakova E, Shachar-Hill Y, Hanson AD

Title

Functional characterization of a methionine gamma-lyase in Arabidopsis and its implication in an alternative to the reverse trans-sulfuration pathway.

Journal

Plant Cell Physiol 48:232-42 (2007)
DOI:10.1093/pcp/pcl055

Reference

PMID:17030798

Authors

Rebeille F, Jabrin S, Bligny R, Loizeau K, Gambonnet B, Van Wilder V, Douce R, Ravanel S

Title

Methionine catabolism in Arabidopsis cells is initiated by a gamma-cleavage process and leads to S-methylcysteine and isoleucine syntheses.

Journal

Proc Natl Acad Sci U S A 103:15687-92 (2006)
DOI:10.1073/pnas.0606195103

Reference

PMID:18625006

Authors

Pirkov I, Norbeck J, Gustafsson L, Albers E

Title

A complete inventory of all enzymes in the eukaryotic methionine salvage pathway.

Journal

FEBS J 275:4111-20 (2008)
DOI:10.1111/j.1742-4658.2008.06552.x

Reference

PMID:18391471

Authors

Ashida H, Saito Y, Kojima C, Yokota A

Title

Enzymatic characterization of 5-methylthioribulose-1-phosphate dehydratase of the methionine salvage pathway in Bacillus subtilis.

Journal

Biosci Biotechnol Biochem 72:959-67 (2008)
DOI:10.1271/bbb.70651

Reference

PMID:10613873

Authors

Kitabatake M, So MW, Tumbula DL, Soll D

Title

Cysteine biosynthesis pathway in the archaeon Methanosarcina barkeri encoded by acquired bacterial genes?

Journal

J Bacteriol 182:143-5 (2000)
DOI:10.1128/JB.182.1.143-145.2000

Reference

PMID:12644499

Authors

Mino K, Ishikawa K

Title

Characterization of a novel thermostable O-acetylserine sulfhydrylase from Aeropyrum pernix K1.

Journal

J Bacteriol 185:2277-84 (2003)
DOI:10.1128/JB.185.7.2277-2284.2003

Reference

PMID:18520135

Authors

Tanabe S

Title

Development of assay methods for endogenous inorganic sulfur compounds and sulfurtransferases and evaluation of the physiological functions of bound sulfur.

Journal

Yakugaku Zasshi 128:881-900 (2008)
DOI:10.1248/yakushi.128.881

Reference

Authors

Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).

Title

[Cellular Functions and Metabolic Maps] (In Japanese)

Journal

Tokyo Kagaku Dojin (1997)

Reference

PMID:19270684

Authors