KEGG   PATHWAY: pcad00020
Entry
pcad00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Physeter macrocephalus (sperm whale)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pcad00020  Citrate cycle (TCA cycle)
pcad00020

Module
pcad_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:pcad00020]
pcad_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:pcad00020]
pcad_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pcad00020]
pcad_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:pcad00020]
pcad_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pcad00020]
Other DBs
GO: 0006099
Organism
Physeter macrocephalus (sperm whale) [GN:pcad]
Gene
102973923  OGDHL; 2-oxoglutarate dehydrogenase-like, mitochondrial [KO:K00164] [EC:1.2.4.2]
102974199  SDHD; succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial isoform X1 [KO:K00237]
102976006  IDH3A; isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial [KO:K00030] [EC:1.1.1.41]
102976072  SUCLG1; succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
102976733  IDH3G; isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
102976741  ACO1; cytoplasmic aconitate hydratase [KO:K01681] [EC:4.2.1.3]
102977669  IDH1; isocitrate dehydrogenase [NADP] cytoplasmic isoform X1 [KO:K00031] [EC:1.1.1.42]
102978511  DLST; dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial [KO:K00658] [EC:2.3.1.61]
102979662  [KO:K00164] [EC:1.2.4.2]
102979833  SUCLG2; succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial isoform X10 [KO:K01900] [EC:6.2.1.4 6.2.1.5]
102980300  ACO2; aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
102980322  SUCLA2; succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
102980839  CS; citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
102985021  MDH2; malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
102985418  IDH3B; isocitrate dehydrogenase [NAD] subunit beta, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
102986405  [KO:K00237]
102986441  PDHA2; LOW QUALITY PROTEIN: pyruvate dehydrogenase E1 component subunit alpha, testis-specific form, mitochondrial [KO:K00161] [EC:1.2.4.1]
102986461  [KO:K01648] [EC:2.3.3.8]
102987120  SDHA; succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial isoform X1 [KO:K00234] [EC:1.3.5.1]
102987604  SDHB; succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [KO:K00235] [EC:1.3.5.1]
102987935  [KO:K00026] [EC:1.1.1.37]
102988053  PDHA1; pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial isoform X1 [KO:K00161] [EC:1.2.4.1]
102988081  SDHC; succinate dehydrogenase cytochrome b560 subunit, mitochondrial [KO:K00236]
102988097  PDHB; pyruvate dehydrogenase E1 component subunit beta, mitochondrial isoform X4 [KO:K00162] [EC:1.2.4.1]
102988102  FH; fumarate hydratase, mitochondrial [KO:K01679] [EC:4.2.1.2]
102990592  PCK1; phosphoenolpyruvate carboxykinase, cytosolic [GTP] isoform X2 [KO:K01596] [EC:4.1.1.32]
102992090  MDH1; malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
102992392  PC; pyruvate carboxylase, mitochondrial isoform X1 [KO:K01958] [EC:6.4.1.1]
102996350  IDH2; isocitrate dehydrogenase [NADP], mitochondrial isoform X1 [KO:K00031] [EC:1.1.1.42]
102996392  DLD; dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
102996558  DLAT; dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
102997033  PCK2; phosphoenolpyruvate carboxykinase [GTP], mitochondrial isoform X1 [KO:K01596] [EC:4.1.1.32]
114487676  ACLY; ATP-citrate synthase [KO:K01648] [EC:2.3.3.8]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pcad00010  Glycolysis / Gluconeogenesis
pcad00053  Ascorbate and aldarate metabolism
pcad00061  Fatty acid biosynthesis
pcad00062  Fatty acid elongation
pcad00071  Fatty acid degradation
pcad00190  Oxidative phosphorylation
pcad00220  Arginine biosynthesis
pcad00250  Alanine, aspartate and glutamate metabolism
pcad00280  Valine, leucine and isoleucine degradation
pcad00350  Tyrosine metabolism
pcad00470  D-Amino acid metabolism
pcad00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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