KEGG   PATHWAY: pfc00310
Entry
pfc00310                    Pathway                                
Name
Lysine degradation - Pseudomonas fluorescens A506
Class
Metabolism; Amino acid metabolism
Pathway map
pfc00310  Lysine degradation
pfc00310

Module
pfc_M00957  Lysine degradation, bacteria, L-lysine => glutarate => succinate/acetyl-CoA [PATH:pfc00310]
Other DBs
GO: 0006554
Organism
Pseudomonas fluorescens A506 [GN:pfc]
Gene
PflA506_0537  pcd; piperideine-6-carboxylate dehydrogenase [KO:K26061]
PflA506_4414  4-aminobutyrate aminotransferase, putative [KO:K26062] [EC:2.6.1.39]
PflA506_1842  sucB; dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex [KO:K00658] [EC:2.3.1.61]
PflA506_3340  bkdC; 2-oxoisovalerate dehydrogenase E3 component, dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
PflA506_1843  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
PflA506_0112  gcdH; glutaryl-CoA dehydrogenase [KO:K00252] [EC:1.3.8.6]
PflA506_2695  fadB1x; enoyl-coa hydratase FadB1x [KO:K01692] [EC:4.2.1.17]
PflA506_1567  fadB; fatty oxidation complex, alpha subunit [KO:K01825] [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
PflA506_3966  3-hydroxyacyl-CoA dehydrogenase, putative [KO:K01782] [EC:1.1.1.35 4.2.1.17 5.1.2.3]
PflA506_2697  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
PflA506_2282  thiolase domain protein [KO:K00626] [EC:2.3.1.9]
PflA506_2503  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
PflA506_0633  acetyl-CoA acetyltransferase, putative [KO:K00626] [EC:2.3.1.9]
PflA506_3967  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
PflA506_2119  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
PflA506_4896  amine oxidase, flavin-containing [KO:K00468] [EC:1.13.12.2]
PflA506_4897  hydrolase, carbon-nitrogen family protein [KO:K01506] [EC:3.5.1.30]
PflA506_2713  aspartate racemase [KO:K25316] [EC:5.1.1.10]
PflA506_2598  patA; putrescine aminotransferase [KO:K09251] [EC:2.6.1.82]
PflA506_0192  gabT; 4-aminobutyrate transaminase [KO:K14268] [EC:2.6.1.48 2.6.1.19]
PflA506_1096  aminotransferase, class III [KO:K07250] [EC:2.6.1.19 2.6.1.22 2.6.1.48]
PflA506_0191  gabD; succinate-semialdehyde dehydrogenase [KO:K00135] [EC:1.2.1.16 1.2.1.79 1.2.1.20]
PflA506_2928  lhgO; L-2-hydroxyglutarate oxidase [KO:K15736] [EC:1.1.5.13]
PflA506_2371  hypothetical protein [KO:K25986] [EC:1.13.11.93]
PflA506_0113  CoA-transferase, family III [KO:K01041] [EC:2.8.3.-]
PflA506_1943  KamA family protein [KO:K01843] [EC:5.4.3.2]
PflA506_2990  malate/L-lactate dehydrogenase family protein [KO:K13609] [EC:1.5.1.21]
PflA506_0538  FAD dependent oxidoreductase [KO:K26065]
Compound
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00037  Glycine
C00042  Succinate
C00047  L-Lysine
C00068  Thiamin diphosphate
C00136  Butanoyl-CoA
C00164  Acetoacetate
C00322  2-Oxoadipate
C00332  Acetoacetyl-CoA
C00408  L-Pipecolate
C00431  5-Aminopentanoate
C00449  N6-(L-1,3-Dicarboxypropyl)-L-lysine
C00450  (S)-2,3,4,5-Tetrahydropyridine-2-carboxylate
C00487  Carnitine
C00489  Glutarate
C00527  Glutaryl-CoA
C00739  D-Lysine
C00877  Crotonoyl-CoA
C00956  L-2-Aminoadipate
C00990  5-Aminopentanamide
C01087  (R)-2-Hydroxyglutarate
C01142  (3S)-3,6-Diaminohexanoate
C01144  (S)-3-Hydroxybutanoyl-CoA
C01149  4-Trimethylammoniobutanal
C01181  4-Trimethylammoniobutanoate
C01186  (3S,5S)-3,5-Diaminohexanoate
C01211  Procollagen 5-hydroxy-L-lysine
C01259  (3S)-3-Hydroxy-N6,N6,N6-trimethyl-L-lysine
C01672  Cadaverine
C02188  Protein lysine
C02727  N6-Acetyl-L-lysine
C03087  5-Acetamidopentanoate
C03196  (S)-2-Hydroxyglutarate
C03239  6-Amino-2-oxohexanoate
C03273  5-Oxopentanoate
C03366  5-Phosphooxy-L-lysine
C03656  (S)-5-Amino-3-oxohexanoic acid
C03793  N6,N6,N6-Trimethyl-L-lysine
C04020  D-Lysopine
C04076  L-2-Aminoadipate 6-semialdehyde
C04092  Delta1-Piperideine-2-carboxylate
C04487  5-(D-Galactosyloxy)-L-lysine-procollagen
C05161  (2R,5S)-2,5-Diaminohexanoate
C05231  L-3-Aminobutyryl-CoA
C05544  Protein N6-methyl-L-lysine
C05545  Protein N6,N6-dimethyl-L-lysine
C05546  Protein N6,N6,N6-trimethyl-L-lysine
C05548  6-Acetamido-2-oxohexanoate
C05825  2-Amino-5-oxohexanoate
C06157  [Dihydrolipoyllysine-residue succinyltransferase] S-glutaryldihydrolipoyllysine
C12455  5-Aminopentanal
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16741  L-Hydroxylysine
C22667  4-Carboxy-1-hydroxybutyryl-ThPP
Reference
PMID:11802770
  Authors
Vaz FM, Wanders RJ.
  Title
Carnitine biosynthesis in mammals.
  Journal
Biochem J 361:417-29 (2002)
DOI:10.1042/bj3610417
Reference
PMID:1682209
  Authors
Large PJ, Robertson A.
  Title
The route of lysine breakdown in Candida tropicalis.
  Journal
FEMS Microbiol Lett 66:209-13 (1991)
DOI:10.1111/j.1574-6968.1990.tb03998.x
Related
pathway
pfc00020  Citrate cycle (TCA cycle)
pfc00300  Lysine biosynthesis
pfc00780  Biotin metabolism
KO pathway
ko00310   
LinkDB

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