KEGG   PATHWAY: pfs00020
Entry
pfs00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Pseudomonas fluorescens SBW25
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pfs00020  Citrate cycle (TCA cycle)
pfs00020

Module
pfs_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:pfs00020]
pfs_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:pfs00020]
pfs_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pfs00020]
pfs_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:pfs00020]
pfs_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pfs00020]
pfs_M00982  Methylcitrate cycle [PATH:pfs00020]
Other DBs
GO: 0006099
Organism
Pseudomonas fluorescens SBW25 [GN:pfs]
Gene
PFLU_0110  [KO:K18118] [EC:2.8.3.18]
PFLU_0267  pckA; Phosphoenolpyruvate carboxykinase (ATP) (PCK) (PEP carboxykinase) (PEPCK) (EC [KO:K01610] [EC:4.1.1.49]
PFLU_0459  aceF; Acetyltransferase component of pyruvate dehydrogenase complex (EC [KO:K00627] [EC:2.3.1.12]
PFLU_0460  aceE1; Pyruvate dehydrogenase E1 component (EC [KO:K00163] [EC:1.2.4.1]
PFLU_0874  fumC1; Fumarate hydratase class II (Fumarase C) (EC (Aerobic fumarase) (Iron-independent fumarase) [KO:K01679] [EC:4.2.1.2]
PFLU_0904  mqo; Probable malate:quinone oxidoreductase (EC (MQO) (Malate dehydrogenase [quinone]) [KO:K00116] [EC:1.1.5.4]
PFLU_1542  acnA; Aconitate hydratase (Aconitase) (EC [KO:K27802]
PFLU_1613  mqo; Probable malate:quinone oxidoreductase (EC (MQO) (Malate dehydrogenase [quinone]) [KO:K00116] [EC:1.1.5.4]
PFLU_1815  gltA; Citrate synthase [KO:K01647] [EC:2.3.3.1]
PFLU_1816  sdhC; Succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
PFLU_1817  [KO:K00242]
PFLU_1818  sdhA; Succinate dehydrogenase flavoprotein subunit (EC [KO:K00239] [EC:1.3.5.1]
PFLU_1819  sdhB; Succinate dehydrogenase iron-sulfur protein (EC [KO:K00240] [EC:1.3.5.1]
PFLU_1820  sucA; Oxoglutarate dehydrogenase (succinyl-transferring) (EC [KO:K00164] [EC:1.2.4.2]
PFLU_1821  sucB; Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex (EC (2-oxoglutarate dehydrogenase complex component E2) [KO:K00658] [EC:2.3.1.61]
PFLU_1822  lpd; Dihydrolipoyl dehydrogenase (EC [KO:K00382] [EC:1.8.1.4]
PFLU_1823  sucC; Succinate--CoA ligase [ADP-forming] subunit beta (EC (Succinyl-CoA synthetase subunit beta) (SCS-beta) [KO:K01903] [EC:6.2.1.5]
PFLU_1824  sucD; Succinate--CoA ligase [ADP-forming] subunit alpha (EC (Succinyl-CoA synthetase subunit alpha) (SCS-alpha) [KO:K01902] [EC:6.2.1.5]
PFLU_3193  [KO:K00163] [EC:1.2.4.1]
PFLU_3489  [KO:K01682] [EC:4.2.1.3 4.2.1.99]
PFLU_3808  [KO:K00031] [EC:1.1.1.42]
PFLU_3809  [KO:K00031] [EC:1.1.1.42]
PFLU_3920  [KO:K00163] [EC:1.2.4.1]
PFLU_3967  [KO:K00382] [EC:1.8.1.4]
PFLU_4314  [KO:K01679] [EC:4.2.1.2]
PFLU_4631  [KO:K01659] [EC:2.3.3.5]
PFLU_4952  [KO:K01676] [EC:4.2.1.2]
PFLU_6070  oadA; Oxaloacetate decarboxylase alpha chain (EC [KO:K01960] [EC:6.4.1.1]
PFLU_6071  accC; Biotin carboxylase (EC [KO:K01959] [EC:6.4.1.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pfs00010  Glycolysis / Gluconeogenesis
pfs00053  Ascorbate and aldarate metabolism
pfs00061  Fatty acid biosynthesis
pfs00071  Fatty acid degradation
pfs00190  Oxidative phosphorylation
pfs00220  Arginine biosynthesis
pfs00250  Alanine, aspartate and glutamate metabolism
pfs00280  Valine, leucine and isoleucine degradation
pfs00350  Tyrosine metabolism
pfs00470  D-Amino acid metabolism
pfs00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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