KEGG   PATHWAY: pleu03008
Entry
pleu03008                   Pathway                                
Name
Ribosome biogenesis in eukaryotes - Peromyscus leucopus (white-footed mouse)
Description
Ribosomes are the cellular factories responsible for making proteins. In eukaryotes, ribosome biogenesis involves the production and correct assembly of four rRNAs and about 80 ribosomal proteins. It requires hundreds of factors not present in the mature particle. In the absence of these proteins, ribosome biogenesis is stalled and cell growth is terminated even under optimal growth conditions. The primary pre-rRNA transcript is assembled into the 90S pre-ribosome, which contains both 40S and 60S assembly factors. Within this complex, the pre-rRNA is cleaved. pre-60S ribosomes are subjected to several sequential processing steps in the nucleoplasm involving numerous assembly intermediates before it is exported to the cytoplasm and matured into the 60S ribosomal subunit. The pre-40S ribosome is matured to the small ribosomal subunit in the cytoplasm by cleavage.
Class
Genetic Information Processing; Translation
Pathway map
pleu03008  Ribosome biogenesis in eukaryotes
pleu03008

Organism
Peromyscus leucopus (white-footed mouse) [GN:pleu]
Gene
114680790  Tbl3; transducin beta-like protein 3 [KO:K14555]
114681338  Pop5; ribonuclease P/MRP protein subunit POP5 [KO:K03537] [EC:3.1.26.5]
114681815  [KO:K01981]
114682066  [KO:K01981]
114682481  [KO:K01981]
114682589  Riok1; serine/threonine-protein kinase RIO1 isoform X1 [KO:K07178] [EC:2.7.11.1]
114682710  Gar1; H/ACA ribonucleoprotein complex subunit 1 [KO:K11128]
114682922  [KO:K01981]
114683049  Nhp2; H/ACA ribonucleoprotein complex subunit 2 [KO:K11129]
114683088  Nop10; H/ACA ribonucleoprotein complex subunit 3 [KO:K11130]
114683417  Utp4; U3 small nucleolar RNA-associated protein 4 homolog isoform X1 [KO:K14548]
114683512  [KO:K01981]
114683517  [KO:K01981]
114683645  Nxf1; nuclear RNA export factor 1 [KO:K14284]
114683859  Nxf3; LOW QUALITY PROTEIN: nuclear RNA export factor 3 [KO:K14284]
114683862  [KO:K14284]
114683863  [KO:K14284]
114683885  [KO:K01981]
114683934  [KO:K03538] [EC:3.1.26.5]
114684622  Fbl; rRNA 2'-O-methyltransferase fibrillarin [KO:K14563] [EC:2.1.1.-]
114684657  [KO:K01981]
114684814  [KO:K14483]
114684871  Gtpbp4; nucleolar GTP-binding protein 1 [KO:K06943]
114685093  Heatr1; HEAT repeat-containing protein 1 [KO:K14550]
114685745  Nop58; nucleolar protein 58 isoform X1 [KO:K14565]
114685815  Pwp2; periodic tryptophan protein 2 homolog [KO:K14558]
114685845  [KO:K14284]
114685911  [KO:K01981]
114686383  [KO:K14565]
114686393  Rrp7a; ribosomal RNA-processing protein 7 homolog A [KO:K14545]
114686401  [KO:K14571]
114686513  Rexo1; RNA exonuclease 1 homolog [KO:K14570] [EC:3.1.-.-]
114686547  Lsg1; large subunit GTPase 1 homolog [KO:K14539] [EC:3.6.1.-]
114686784  Pop7; ribonuclease P protein subunit p20 [KO:K14527] [EC:3.1.26.5]
114687030  [KO:K14483]
114687122  [KO:K01981]
114687396  [KO:K01981]
114688363  [KO:K01981]
114689549  [KO:K01981]
114689554  [KO:K14483]
114689692  [KO:K14483]
114689854  Fbll1; rRNA/tRNA 2'-O-methyltransferase fibrillarin-like protein 1 [KO:K14563] [EC:2.1.1.-]
114689858  [KO:K01981]
114690228  Rexo2; oligoribonuclease, mitochondrial isoform X1 [KO:K13288] [EC:3.1.-.-]
114690322  Imp3; U3 small nucleolar ribonucleoprotein protein IMP3 [KO:K14560]
114690340  Rpp25; ribonuclease P protein subunit p25 [KO:K14525] [EC:3.1.26.5]
114690530  Imp4; U3 small nucleolar ribonucleoprotein protein IMP4 [KO:K14561]
114690622  [KO:K14571]
114690970  Xrn1; 5'-3' exoribonuclease 1 isoform X1 [KO:K12618] [EC:3.1.13.-]
114691092  Rbm28; RNA-binding protein 28 [KO:K14573]
114691316  Riok2; serine/threonine-protein kinase RIO2 [KO:K07179] [EC:2.7.11.1]
114691532  Utp6; U3 small nucleolar RNA-associated protein 6 homolog [KO:K14557]
114691637  Wdr36; WD repeat-containing protein 36 [KO:K14554]
114691706  Nmd3; 60S ribosomal export protein NMD3 [KO:K07562]
114691968  [KO:K01981]
114692168  Rexo5; LOW QUALITY PROTEIN: RNA exonuclease 5 [KO:K14570] [EC:3.1.-.-]
114692874  Utp18; U3 small nucleolar RNA-associated protein 18 homolog [KO:K14553]
114693584  [KO:K01981]
114693660  Sbds; ribosome maturation protein SBDS [KO:K14574]
114693686  Ran; GTP-binding nuclear protein Ran [KO:K07936]
114693715  [KO:K01981]
114694313  Snu13; NHP2-like protein 1 [KO:K12845]
114694472  [KO:K01981]
114694482  Csnk2a2; casein kinase II subunit alpha' isoform X1 [KO:K03097] [EC:2.7.11.1]
114694624  [KO:K01981]
114694666  Utp15; U3 small nucleolar RNA-associated protein 15 homolog [KO:K14549]
114694926  [KO:K12845]
114695307  [KO:K01981]
114695402  [KO:K14539] [EC:3.6.1.-]
114695409  [KO:K01981]
114695410  [KO:K01981]
114695425  Mdn1; LOW QUALITY PROTEIN: midasin [KO:K14572]
114695496  Mphosph10; U3 small nucleolar ribonucleoprotein protein MPP10 [KO:K14559]
114695517  [KO:K01981]
114695657  [KO:K12845]
114695672  [KO:K01981]
114695759  [KO:K01981]
114695890  [KO:K14570] [EC:3.1.-.-]
114696223  Efl1; elongation factor-like GTPase 1 [KO:K14536] [EC:3.6.5.-]
114696277  Wdr43; WD repeat-containing protein 43 [KO:K14546]
114696304  [KO:K01981]
114696390  [KO:K07936]
114696439  [KO:K01981]
114696782  [KO:K01981]
114697795  [KO:K01981]
114697951  Xpo1; exportin-1 isoform X1 [KO:K14290]
114698126  Fcf1; rRNA-processing protein FCF1 homolog [KO:K14566]
114698135  [KO:K01981]
114698289  [KO:K01986]
114698297  Nxt2; NTF2-related export protein 2 isoform X1 [KO:K14285]
114698562  Wdr3; WD repeat-containing protein 3 isoform X1 [KO:K14556]
114698886  Pop4; LOW QUALITY PROTEIN: ribonuclease P protein subunit p29 [KO:K03538] [EC:3.1.26.5]
114699001  Nat10; LOW QUALITY PROTEIN: RNA cytidine acetyltransferase [KO:K14521] [EC:2.3.1.-]
114699293  [KO:K14483]
114699294  [KO:K14483]
114699295  [KO:K14483]
114699321  [KO:K14570] [EC:3.1.-.-]
114699413  [KO:K07936]
114699423  [KO:K01981]
114699487  Nop56; nucleolar protein 56 isoform X1 [KO:K14564]
114700012  [KO:K01981]
114700258  [KO:K13288] [EC:3.1.-.-]
114700770  Bms1; ribosome biogenesis protein BMS1 homolog [KO:K14569]
114701005  [KO:K01981]
114701149  [KO:K12845]
114701472  Rpp40; ribonuclease P protein subunit p40 isoform X1 [KO:K14530] [EC:3.1.26.5]
114701692  Nxt1; NTF2-related export protein 1 [KO:K14285]
114701700  Xrn2; 5'-3' exoribonuclease 2 isoform X1 [KO:K12619] [EC:3.1.13.-]
114701848  [KO:K01981]
114702365  [KO:K14483]
114702430  Rpp30; ribonuclease P protein subunit p30 isoform X2 [KO:K03539] [EC:3.1.26.5]
114702875  Gnl3l; guanine nucleotide-binding protein-like 3-like protein [KO:K14538]
114703233  Rpp25l; ribonuclease P protein subunit p25-like protein [KO:K14525] [EC:3.1.26.5]
114703249  Nol6; nucleolar protein 6 isoform X1 [KO:K14544]
114703304  [KO:K14567]
114703559  Drosha; ribonuclease 3 isoform X1 [KO:K03685] [EC:3.1.26.3]
114703624  Pop1; ribonucleases P/MRP protein subunit POP1 [KO:K01164] [EC:3.1.26.5]
114703864  Ak6; adenylate kinase isoenzyme 6 [KO:K18532] [EC:2.7.4.3]
114704054  [KO:K11130]
114704295  Gnl2; nucleolar GTP-binding protein 2 [KO:K14537]
114705239  Wdr75; WD repeat-containing protein 75 [KO:K14552]
114705474  Utp14a; U3 small nucleolar RNA-associated protein 14 homolog A [KO:K14567]
114705599  Csnk2a1; LOW QUALITY PROTEIN: casein kinase II subunit alpha [KO:K03097] [EC:2.7.11.1]
114705884  Csnk2b; casein kinase II subunit beta isoform X1 [KO:K03115]
114706098  [KO:K07936]
114706209  Dkc1; H/ACA ribonucleoprotein complex subunit DKC1 [KO:K11131] [EC:5.4.99.-]
114706565  Eif6; eukaryotic translation initiation factor 6 [KO:K03264]
114706729  Nob1; LOW QUALITY PROTEIN: RNA-binding protein NOB1 [KO:K11883]
114707117  [KO:K01981]
114707167  Spata5; ATPase family protein 2 homolog isoform X1 [KO:K14575]
114707189  [KO:K01981]
114707374  Tcof1; LOW QUALITY PROTEIN: treacle protein [KO:K14562]
114707692  [KO:K01981]
114707943  [KO:K03097] [EC:2.7.11.1]
114708175  Gnl3; guanine nucleotide-binding protein-like 3 [KO:K14538]
114708773  Emg1; ribosomal RNA small subunit methyltransferase NEP1 isoform X1 [KO:K14568] [EC:2.1.1.260]
114709029  [KO:K18532] [EC:2.7.4.3]
114709754  [KO:K14483]
114709806  [KO:K01981]
114710378  Rcl1; RNA 3'-terminal phosphate cyclase-like protein [KO:K11108]
114710820  Rpp38; ribonuclease P protein subunit p38 isoform X1 [KO:K14523] [EC:3.1.26.5]
119087196  [KO:K14564]
119087374  [KO:K03264]
119089141  [KO:K14571]
Reference
  Authors
Freed EF, Bleichert F, Dutca LM, Baserga SJ
  Title
When ribosomes go bad: diseases of ribosome biogenesis.
  Journal
Mol Biosyst 6:481-93 (2010)
DOI:10.1039/b919670f
Reference
  Authors
Perez-Fernandez J, Roman A, De Las Rivas J, Bustelo XR, Dosil M
  Title
The 90S preribosome is a multimodular structure that is assembled through a hierarchical mechanism.
  Journal
Mol Cell Biol 27:5414-29 (2007)
DOI:10.1128/MCB.00380-07
Reference
  Authors
Strunk BS, Karbstein K
  Title
Powering through ribosome assembly.
  Journal
RNA 15:2083-104 (2009)
DOI:10.1261/rna.1792109
Reference
  Authors
Granneman S, Baserga SJ
  Title
Ribosome biogenesis: of knobs and RNA processing.
  Journal
Exp Cell Res 296:43-50 (2004)
DOI:10.1016/j.yexcr.2004.03.016
Reference
  Authors
Kressler D, Hurt E, Bassler J
  Title
Driving ribosome assembly.
  Journal
Biochim Biophys Acta 1803:673-83 (2010)
DOI:10.1016/j.bbamcr.2009.10.009
Related
pathway
pleu03010  Ribosome
KO pathway
ko03008   

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