KEGG   PATHWAY: pre00020
Entry
pre00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Metapseudomonas resinovorans
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pre00020  Citrate cycle (TCA cycle)
pre00020

Module
pre_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:pre00020]
pre_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:pre00020]
pre_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pre00020]
pre_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:pre00020]
pre_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pre00020]
pre_M00982  Methylcitrate cycle [PATH:pre00020]
Other DBs
GO: 0006099
Organism
Metapseudomonas resinovorans [GN:pre]
Gene
PCA10_01110  [KO:K18118] [EC:2.8.3.18]
PCA10_10210  fumC; fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
PCA10_13230  fumC; fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
PCA10_21630  [KO:K01647] [EC:2.3.3.1]
PCA10_21640  sdhC; succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
PCA10_21650  sdhD; succinate dehydrogenase hydrophobic membrane anchor subunit [KO:K00242]
PCA10_21660  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
PCA10_21670  sdhB; succinate dehydrogenase iron-sulfur protein subunit [KO:K00240] [EC:1.3.5.1]
PCA10_21680  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
PCA10_21690  sucB; 2-oxoglutarate dehydrogenase E2 component [KO:K00658] [EC:2.3.1.61]
PCA10_21700  lpd; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
PCA10_21710  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
PCA10_21720  sucD; succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
PCA10_23230  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
PCA10_24670  lpd; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
PCA10_25100  icd2; monomeric isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
PCA10_25110  icd; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
PCA10_27520  acnB; aconitase B [KO:K01682] [EC:4.2.1.3 4.2.1.99]
PCA10_32070  mqo; malate--quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
PCA10_36960  acnB; aconitase B [KO:K01682] [EC:4.2.1.3 4.2.1.99]
PCA10_37220  prpC; methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
PCA10_38140  acnA; aconitase A [KO:K27802]
PCA10_46490  fumA; fumarate hydratase class I [KO:K01676] [EC:4.2.1.2]
PCA10_48060  mqo; malate--quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
PCA10_52400  aceE; pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
PCA10_52410  aceF; pyruvate dehydrogenase E2 component [KO:K00627] [EC:2.3.1.12]
PCA10_54120  pckA; phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
PCA10_55950  pycB; pyruvate carboxylase subunit B [KO:K01960] [EC:6.4.1.1]
PCA10_55960  pycA; pyruvate carboxylase subunit A [KO:K01959] [EC:6.4.1.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pre00010  Glycolysis / Gluconeogenesis
pre00053  Ascorbate and aldarate metabolism
pre00061  Fatty acid biosynthesis
pre00071  Fatty acid degradation
pre00190  Oxidative phosphorylation
pre00220  Arginine biosynthesis
pre00250  Alanine, aspartate and glutamate metabolism
pre00280  Valine, leucine and isoleucine degradation
pre00350  Tyrosine metabolism
pre00470  D-Amino acid metabolism
pre00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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