KEGG   PATHWAY: pvb00020
Entry
pvb00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Pseudoalteromonas viridis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pvb00020  Citrate cycle (TCA cycle)
pvb00020

Module
pvb_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:pvb00020]
pvb_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:pvb00020]
pvb_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pvb00020]
pvb_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:pvb00020]
pvb_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pvb00020]
pvb_M00982  Methylcitrate cycle [PATH:pvb00020]
Other DBs
GO: 0006099
Organism
Pseudoalteromonas viridis [GN:pvb]
Gene
J5X90_01445  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
J5X90_01450  aceF; pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
J5X90_01455  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
J5X90_05720  [KO:K01679] [EC:4.2.1.2]
J5X90_06230  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
J5X90_07250  [KO:K01610] [EC:4.1.1.49]
J5X90_09245  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
J5X90_13635  [KO:K00031] [EC:1.1.1.42]
J5X90_15600  [KO:K01682] [EC:4.2.1.3 4.2.1.99]
J5X90_16030  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
J5X90_16035  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
J5X90_16040  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
J5X90_16045  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
J5X90_16050  [KO:K00240] [EC:1.3.5.1]
J5X90_16055  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
J5X90_16060  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
J5X90_16065  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
J5X90_16070  [KO:K01647] [EC:2.3.3.1]
J5X90_16750  [KO:K01676] [EC:4.2.1.2]
J5X90_19290  [KO:K00382] [EC:1.8.1.4]
J5X90_20150  [KO:K00030] [EC:1.1.1.41]
J5X90_22565  prpC; 2-methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pvb00010  Glycolysis / Gluconeogenesis
pvb00053  Ascorbate and aldarate metabolism
pvb00061  Fatty acid biosynthesis
pvb00071  Fatty acid degradation
pvb00190  Oxidative phosphorylation
pvb00220  Arginine biosynthesis
pvb00250  Alanine, aspartate and glutamate metabolism
pvb00280  Valine, leucine and isoleucine degradation
pvb00350  Tyrosine metabolism
pvb00470  D-Amino acid metabolism
pvb00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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