KEGG   PATHWAY: pvc00230
Entry
pvc00230                    Pathway                                
Name
Purine metabolism - Providencia vermicola
Class
Metabolism; Nucleotide metabolism
Pathway map
pvc00230  Purine metabolism
pvc00230

Module
pvc_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:pvc00230]
pvc_M00048  De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:pvc00230]
pvc_M00049  Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:pvc00230]
pvc_M00050  Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:pvc00230]
pvc_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:pvc00230]
Other DBs
GO: 0006163 0042278
Organism
Providencia vermicola [GN:pvc]
Gene
G3341_00420  nudE; ADP compounds hydrolase NudE [KO:K08312] [EC:3.6.1.-]
G3341_00545  [KO:K01756] [EC:4.3.2.2]
G3341_00825  [KO:K00926] [EC:2.7.2.2]
G3341_01300  spoT; bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase [KO:K01139] [EC:2.7.6.5 3.1.7.2]
G3341_01310  gmk; guanylate kinase [KO:K00942] [EC:2.7.4.8]
G3341_01830  purD; phosphoribosylamine--glycine ligase [KO:K01945] [EC:6.3.4.13]
G3341_01835  purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase [KO:K00602] [EC:2.1.2.3 3.5.4.10]
G3341_02765  [KO:K25589]
G3341_02985  deoB; phosphopentomutase [KO:K01839] [EC:5.4.2.7]
G3341_02990  deoD; purine-nucleoside phosphorylase [KO:K03784] [EC:2.4.2.1]
G3341_03070  yjjX; non-canonical purine NTP phosphatase [KO:K01529]
G3341_03295  [KO:K01119] [EC:3.1.4.16 3.1.3.6]
G3341_03775  [KO:K01487] [EC:3.5.4.3]
G3341_04160  [KO:K01519] [EC:3.6.1.66]
G3341_04320  gpt; xanthine phosphoribosyltransferase [KO:K00769] [EC:2.4.2.22]
G3341_04480  pgeF; polyphenol oxidase [KO:K05810] [EC:2.4.2.1 2.4.2.28 3.5.4.4]
G3341_04600  cysD; sulfate adenylyltransferase subunit CysD [KO:K00957] [EC:2.7.7.4]
G3341_04605  cysN; sulfate adenylyltransferase subunit CysN [KO:K00956] [EC:2.7.7.4]
G3341_04610  cysC; adenylyl-sulfate kinase [KO:K00860] [EC:2.7.1.25]
G3341_04635  surE; 5'/3'-nucleotidase SurE [KO:K03787] [EC:3.1.3.5 3.1.3.6]
G3341_04765  [KO:K01486] [EC:3.5.4.2]
G3341_04870  purT; formate-dependent phosphoribosylglycinamide formyltransferase [KO:K08289] [EC:6.3.1.21]
G3341_05010  hpt; hypoxanthine phosphoribosyltransferase [KO:K00760] [EC:2.4.2.8]
G3341_05155  dgt; dGTPase [KO:K01129] [EC:3.1.5.1]
G3341_05165  relA; GTP diphosphokinase [KO:K00951] [EC:2.7.6.5]
G3341_05170  mazG; nucleoside triphosphate pyrophosphohydrolase [KO:K04765] [EC:3.6.1.9]
G3341_05240  apt; adenine phosphoribosyltransferase [KO:K00759] [EC:2.4.2.7]
G3341_05265  adk; adenylate kinase [KO:K00939] [EC:2.7.4.3]
G3341_05280  [KO:K00892] [EC:2.7.1.73]
G3341_05295  [KO:K11751] [EC:3.1.3.5 3.6.1.45]
G3341_05375  purK; 5-(carboxyamino)imidazole ribonucleotide synthase [KO:K01589] [EC:6.3.4.18]
G3341_05380  purE; 5-(carboxyamino)imidazole ribonucleotide mutase [KO:K01588] [EC:5.4.99.18]
G3341_05785  [KO:K01939] [EC:6.3.4.4]
G3341_07230  purL; phosphoribosylformylglycinamidine synthase [KO:K01952] [EC:6.3.5.3]
G3341_07360  ndk; nucleoside-diphosphate kinase [KO:K00940] [EC:2.7.4.6]
G3341_07580  [KO:K22879] [EC:1.14.13.113]
G3341_08000  purF; amidophosphoribosyltransferase [KO:K00764] [EC:2.4.2.14]
G3341_08085  yfbR; 5'-deoxynucleotidase [KO:K08722] [EC:3.1.3.89]
G3341_08235  nrdB; ribonucleotide-diphosphate reductase subunit beta [KO:K00526] [EC:1.17.4.1]
G3341_08240  nrdA; ribonucleoside-diphosphate reductase subunit alpha [KO:K00525] [EC:1.17.4.1]
G3341_09020  [KO:K05873] [EC:4.6.1.1]
G3341_09065  purB; adenylosuccinate lyase [KO:K01756] [EC:4.3.2.2]
G3341_09305  ppx; exopolyphosphatase [KO:K01524] [EC:3.6.1.11 3.6.1.40]
G3341_09320  purN; phosphoribosylglycinamide formyltransferase [KO:K11175] [EC:2.1.2.2]
G3341_09325  purM; phosphoribosylformylglycinamidine cyclo-ligase [KO:K01933] [EC:6.3.3.1]
G3341_09385  purC; phosphoribosylaminoimidazolesuccinocarboxamide synthase [KO:K01923] [EC:6.3.2.6]
G3341_09505  guaB; IMP dehydrogenase [KO:K00088] [EC:1.1.1.205]
G3341_09510  guaA; glutamine-hydrolyzing GMP synthase [KO:K01951] [EC:6.3.5.2]
G3341_10130  add; adenosine deaminase [KO:K01488] [EC:3.5.4.4]
G3341_10660  [KO:K01241] [EC:3.2.2.4]
G3341_11265  [KO:K00948] [EC:2.7.6.1]
G3341_12140  [KO:K02083] [EC:3.5.3.9]
G3341_14175  pgm; alpha-D-glucose phosphate-specific phosphoglucomutase [KO:K01835] [EC:5.4.2.2]
G3341_15335  nrdE; class 1b ribonucleoside-diphosphate reductase subunit alpha [KO:K00525] [EC:1.17.4.1]
G3341_15340  nrdF; class 1b ribonucleoside-diphosphate reductase subunit beta [KO:K00526] [EC:1.17.4.1]
G3341_15655  [KO:K06966] [EC:3.2.2.10 3.2.2.-]
G3341_15850  apaH; bis(5'-nucleosyl)-tetraphosphatase (symmetrical) [KO:K01525] [EC:3.6.1.41]
G3341_15890  cpdA; 3',5'-cyclic-AMP phosphodiesterase [KO:K03651] [EC:3.1.4.53]
G3341_15895  nudF; ADP-ribose diphosphatase [KO:K01515] [EC:3.6.1.13 3.6.1.-]
G3341_16175  [KO:K01428] [EC:3.5.1.5]
G3341_16180  [KO:K01429] [EC:3.5.1.5]
G3341_16185  [KO:K01430] [EC:3.5.1.5]
G3341_17600  nrdD; anaerobic ribonucleoside-triphosphate reductase [KO:K21636] [EC:1.1.98.6]
G3341_17975  [KO:K01939] [EC:6.3.4.4]
G3341_18255  [KO:K05851] [EC:4.6.1.1]
G3341_18385  gppA; guanosine-5'-triphosphate,3'-diphosphate diphosphatase [KO:K01524] [EC:3.6.1.11 3.6.1.40]
G3341_19330  [KO:K03783] [EC:2.4.2.1]
Compound
C00002  ATP
C00008  ADP
C00011  CO2
C00014  Ammonia
C00020  AMP
C00035  GDP
C00037  Glycine
C00039  DNA
C00044  GTP
C00046  RNA
C00048  Glyoxylate
C00053  3'-Phosphoadenylyl sulfate
C00054  Adenosine 3',5'-bisphosphate
C00059  Sulfate
C00064  L-Glutamine
C00081  ITP
C00086  Urea
C00104  IDP
C00117  D-Ribose 5-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00130  IMP
C00131  dATP
C00144  GMP
C00147  Adenine
C00169  Carbamoyl phosphate
C00206  dADP
C00209  Oxalate
C00212  Adenosine
C00224  Adenylyl sulfate
C00242  Guanine
C00262  Hypoxanthine
C00286  dGTP
C00288  HCO3-
C00294  Inosine
C00301  ADP-ribose
C00330  Deoxyguanosine
C00360  dAMP
C00361  dGDP
C00362  dGMP
C00366  Urate
C00385  Xanthine
C00387  Guanosine
C00499  Allantoate
C00559  Deoxyadenosine
C00575  3',5'-Cyclic AMP
C00603  (S)-Ureidoglycolate
C00620  alpha-D-Ribose 1-phosphate
C00655  Xanthosine 5'-phosphate
C00700  XTP
C00802  Oxalureate
C00942  3',5'-Cyclic GMP
C01228  Guanosine 3',5'-bis(diphosphate)
C01260  P1,P4-Bis(5'-adenosyl)tetraphosphate
C01261  P1,P4-Bis(5'-guanosyl) tetraphosphate
C01344  dIDP
C01345  dITP
C01367  3'-AMP
C01444  Oxamate
C01762  Xanthosine
C02091  (S)-Ureidoglycine
C02348  (R)(-)-Allantoin
C02350  (S)-Allantoin
C02353  2',3'-Cyclic AMP
C02718  N-Formiminoglycine
C03090  5-Phosphoribosylamine
C03373  Aminoimidazole ribotide
C03483  Adenosine tetraphosphate
C03614  Inosine 5'-tetraphosphate
C03794  N6-(1,2-Dicarboxyethyl)-AMP
C03838  5'-Phosphoribosylglycinamide
C04051  5-Amino-4-imidazolecarboxyamide
C04376  5'-Phosphoribosyl-N-formylglycinamide
C04392  P1,P4-Bis(5'-xanthosyl) tetraphosphate
C04494  Guanosine 3'-diphosphate 5'-triphosphate
C04640  2-(Formamido)-N1-(5'-phosphoribosyl)acetamidine
C04677  1-(5'-Phosphoribosyl)-5-amino-4-imidazolecarboxamide
C04734  1-(5'-Phosphoribosyl)-5-formamido-4-imidazolecarboxamide
C04751  1-(5-Phospho-D-ribosyl)-5-amino-4-imidazolecarboxylate
C04823  1-(5'-Phosphoribosyl)-5-amino-4-(N-succinocarboxamide)-imidazole
C05239  5-Aminoimidazole
C05512  Deoxyinosine
C05513  Urate-3-ribonucleoside
C05515  5-Ureido-4-imidazole carboxylate
C05516  5-Amino-4-imidazole carboxylate
C05993  Acetyl adenylate
C06193  Guanosine 3'-phosphate
C06194  2',3'-Cyclic GMP
C06195  Imidazolone
C06196  2'-Deoxyinosine 5'-phosphate
C06197  P1,P3-Bis(5'-adenosyl) triphosphate
C06433  5'-Benzoylphosphoadenosine
C06435  5'-Butyrylphosphoinosine
C11821  5-Hydroxyisourate
C12248  5-Hydroxy-2-oxo-4-ureido-2,5-dihydro-1H-imidazole-5-carboxylate
C15667  5-Carboxyamino-1-(5-phospho-D-ribosyl)imidazole
C22395  N6-Succino-2-amino-2'-deoxyadenylate
C22441  dZMP
C22442  dZDP
C22443  dZTP
C22499  8-Hydroxyadenine
C22500  2,8-Dihydroxyadenine
Reference
PMID:10601204
  Authors
Cusa E, Obradors N, Baldoma L, Badia J, Aguilar J.
  Title
Genetic analysis of a chromosomal region containing genes required for assimilation of allantoin nitrogen and linked glyoxylate metabolism in Escherichia coli.
  Journal
J Bacteriol 181:7479-84 (1999)
DOI:10.1128/JB.181.24.7479-7484.1999
Reference
PMID:10986234
  Authors
Xi H, Schneider BL, Reitzer L.
  Title
Purine catabolism in Escherichia coli and function of xanthine dehydrogenase in purine salvage.
  Journal
J Bacteriol 182:5332-41 (2000)
DOI:10.1128/JB.182.19.5332-5341.2000
Related
pathway
pvc00030  Pentose phosphate pathway
pvc00220  Arginine biosynthesis
pvc00250  Alanine, aspartate and glutamate metabolism
pvc00260  Glycine, serine and threonine metabolism
pvc00340  Histidine metabolism
pvc00630  Glyoxylate and dicarboxylate metabolism
pvc00730  Thiamine metabolism
pvc00740  Riboflavin metabolism
pvc00790  Folate biosynthesis
KO pathway
ko00230   

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