KEGG   PATHWAY: senr00020
Entry
senr00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Salmonella enterica subsp. enterica serovar Typhimurium DT2
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
senr00020  Citrate cycle (TCA cycle)
senr00020

Module
senr_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:senr00020]
senr_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:senr00020]
senr_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:senr00020]
senr_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:senr00020]
senr_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:senr00020]
senr_M00982  Methylcitrate cycle [PATH:senr00020]
Other DBs
GO: 0006099
Organism
Salmonella enterica subsp. enterica serovar Typhimurium DT2 [GN:senr]
Gene
STMDT2_01541  aceE; pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
STMDT2_01551  aceF; dihydrolipoamide acetyltransferase component (E2) of pyruvate dehydrogenase [KO:K00627] [EC:2.3.1.12]
STMDT2_01561  lpdA; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
STMDT2_01601  acnB; aconitate hydratase 2 (citrate hydro-lyase 2) [KO:K01682] [EC:4.2.1.3 4.2.1.99]
STMDT2_03651  prpC; 6 methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
STMDT2_07131  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
STMDT2_07151  sdhC; succinate dehydrogenase cytochrome b-556 subunit [KO:K00241]
STMDT2_07161  sdhD; succinate dehydrogenase hydrophobic membrane anchor protein [KO:K00242]
STMDT2_07171  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
STMDT2_07181  sdhB; succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
STMDT2_07191  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
STMDT2_07201  sucB; dihydrolipoamide succinyltransferase component (E2) [KO:K00658] [EC:2.3.1.61]
STMDT2_07211  sucC; succinyl-CoA synthetase beta chain [KO:K01903] [EC:6.2.1.5]
STMDT2_07221  sucD; succinyl-CoA synthetase alpha chain [KO:K01902] [EC:6.2.1.5]
STMDT2_07391  [KO:K01678] [EC:4.2.1.2]
STMDT2_07401  [KO:K01677] [EC:4.2.1.2]
STMDT2_11741  icdA; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
STMDT2_13201  [KO:K01675]
STMDT2_13961  fumA; Fumarate hydratase class I, aerobic [KO:K01676] [EC:4.2.1.2]
STMDT2_13971  fumC; Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
STMDT2_15741  [KO:K03737] [EC:1.2.7.1 1.2.7.-]
STMDT2_16371  acnA; aconitate hydratase 1 (citrate hydro-lyase 1) [KO:K27802]
STMDT2_32511  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
STMDT2_33871  pckA; phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
STMDT2_41511  fumB; fumarate hydratase class I [KO:K01676] [EC:4.2.1.2]
STMDT2_41911  frdD; fumarate reductase complex subunit D; membrane anchor polypeptide [KO:K00247]
STMDT2_41921  frdC; fumarate reductase complex subunit C; membrane anchor polypeptide [KO:K00246]
STMDT2_41931  frdB; fumarate reductase, iron-sulfur protein [KO:K00245] [EC:1.3.5.1]
STMDT2_41941  frdA; fumarate reductase, flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
senr00010  Glycolysis / Gluconeogenesis
senr00053  Ascorbate and aldarate metabolism
senr00061  Fatty acid biosynthesis
senr00071  Fatty acid degradation
senr00190  Oxidative phosphorylation
senr00220  Arginine biosynthesis
senr00250  Alanine, aspartate and glutamate metabolism
senr00280  Valine, leucine and isoleucine degradation
senr00350  Tyrosine metabolism
senr00470  D-Amino acid metabolism
senr00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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