KEGG   PATHWAY: skm00260
Entry
skm00260                    Pathway                                
Name
Glycine, serine and threonine metabolism - Sinorhizobium kummerowiae
Description
Serine is derived from 3-phospho-D-glycerate, an intermediate of glycolysis [MD:M00020], and glycine is derived from serine. Threonine is an essential amino acid, which animals cannot synthesize. In bacteria and plants, threonine is derived from aspartate [MD:M00018].
Class
Metabolism; Amino acid metabolism
Pathway map
skm00260  Glycine, serine and threonine metabolism
skm00260

Module
skm_M00018  Threonine biosynthesis, aspartate => homoserine => threonine [PATH:skm00260]
skm_M00020  Serine biosynthesis, glycerate-3P => serine [PATH:skm00260]
skm_M00555  Betaine biosynthesis, choline => betaine [PATH:skm00260]
skm_M00621  Glycine cleavage system [PATH:skm00260]
skm_M00919  Ectoine degradation, ectoine => aspartate [PATH:skm00260]
skm_M00975  Betaine degradation, bacteria, betaine => pyruvate [PATH:skm00260]
Other DBs
GO: 0006544 0006563 0070178 0006566
Organism
Sinorhizobium kummerowiae [GN:skm]
Gene
PZL22_000597  [KO:K11529] [EC:2.7.1.165]
PZL22_001185  [KO:K15785] [EC:2.6.1.76]
PZL22_001186  [KO:K15786] [EC:1.2.1.-]
PZL22_001194  eutB; hydroxyectoine utilization dehydratase EutB [KO:K01754] [EC:4.3.1.19]
PZL22_001196  doeA; ectoine hydrolase DoeA [KO:K15783] [EC:3.5.4.44]
PZL22_001197  doeB; N(2)-acetyl-L-2,4-diaminobutanoate deacetylase DoeB [KO:K15784] [EC:3.5.1.125]
PZL22_001568  [KO:K01752] [EC:4.3.1.17]
PZL22_001611  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
PZL22_001709  gcvP; aminomethyl-transferring glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
PZL22_001710  gcvH; glycine cleavage system protein GcvH [KO:K02437]
PZL22_001711  gcvT; glycine cleavage system aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
PZL22_001799  ilvA; threonine ammonia-lyase [KO:K01754] [EC:4.3.1.19]
PZL22_001975  [KO:K00003] [EC:1.1.1.3]
PZL22_002452  serB; phosphoserine phosphatase SerB [KO:K01079] [EC:3.1.3.3]
PZL22_002570  [KO:K00058] [EC:1.1.1.95 1.1.1.399]
PZL22_002610  [KO:K00315] [EC:1.5.8.4]
PZL22_002647  tdh; L-threonine 3-dehydrogenase [KO:K00060] [EC:1.1.1.103]
PZL22_002648  [KO:K00639] [EC:2.3.1.29]
PZL22_002914  [KO:K00928] [EC:2.7.2.4]
PZL22_003033  serA; phosphoglycerate dehydrogenase [KO:K00058] [EC:1.1.1.95 1.1.1.399]
PZL22_003034  [KO:K00831] [EC:2.6.1.52]
PZL22_003128  [KO:K01620] [EC:4.1.2.48]
PZL22_003168  [KO:K00305] [EC:1.5.3.24 1.5.3.1]
PZL22_003169  [KO:K00302] [EC:1.5.3.24 1.5.3.1]
PZL22_003170  [KO:K00304] [EC:1.5.3.24 1.5.3.1]
PZL22_003171  [KO:K00303] [EC:1.5.3.24 1.5.3.1]
PZL22_003252  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
PZL22_003312  hemA; 5-aminolevulinate synthase [KO:K00643] [EC:2.3.1.37]
PZL22_003370  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
PZL22_003564  [KO:K11529] [EC:2.7.1.165]
PZL22_003585  [KO:K00133] [EC:1.2.1.11]
PZL22_003638  trpB; tryptophan synthase subunit beta [KO:K01696] [EC:4.2.1.20]
PZL22_003639  trpA; tryptophan synthase subunit alpha [KO:K01695] [EC:4.2.1.20]
PZL22_003714  [KO:K00605] [EC:2.1.2.10]
PZL22_003719  [KO:K00605] [EC:2.1.2.10]
PZL22_003766  [KO:K12972] [EC:1.1.1.79 1.1.1.81]
PZL22_003776  [KO:K01834] [EC:5.4.2.11]
PZL22_004479  [KO:K00479] [EC:1.14.13.251]
PZL22_004480  [KO:K21832] [EC:1.14.13.251]
PZL22_004525  [KO:K02204] [EC:2.7.1.39]
PZL22_004533  thrC; threonine synthase [KO:K01733] [EC:4.2.3.1]
PZL22_004564  betA; choline dehydrogenase [KO:K00108] [EC:1.1.99.1]
PZL22_004565  betB; betaine-aldehyde dehydrogenase [KO:K00130] [EC:1.2.1.8]
PZL22_004740  pssA; CDP-diacylglycerol--serine O-phosphatidyltransferase [KO:K17103] [EC:2.7.8.8]
PZL22_004826  [KO:K00600] [EC:2.1.2.1]
PZL22_004930  [KO:K00058] [EC:1.1.1.95 1.1.1.399]
PZL22_004967  [KO:K11529] [EC:2.7.1.165]
PZL22_005008  [KO:K00315] [EC:1.5.8.4]
PZL22_005016  [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
PZL22_005165  betB; betaine-aldehyde dehydrogenase [KO:K00130] [EC:1.2.1.8]
PZL22_005226  [KO:K12972] [EC:1.1.1.79 1.1.1.81]
PZL22_005243  [KO:K01754] [EC:4.3.1.19]
PZL22_005991  [KO:K17103] [EC:2.7.8.8]
PZL22_006020  [KO:K00133] [EC:1.2.1.11]
PZL22_006021  [KO:K00928] [EC:2.7.2.4]
Compound
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00037  Glycine
C00048  Glyoxylate
C00049  L-Aspartate
C00065  L-Serine
C00078  L-Tryptophan
C00097  L-Cysteine
C00101  Tetrahydrofolate
C00109  2-Oxobutanoate
C00114  Choline
C00143  5,10-Methylenetetrahydrofolate
C00168  Hydroxypyruvate
C00188  L-Threonine
C00197  3-Phospho-D-glycerate
C00213  Sarcosine
C00258  D-Glycerate
C00263  L-Homoserine
C00300  Creatine
C00430  5-Aminolevulinate
C00441  L-Aspartate 4-semialdehyde
C00546  Methylglyoxal
C00576  Betaine aldehyde
C00581  Guanidinoacetate
C00631  2-Phospho-D-glycerate
C00719  Betaine
C00740  D-Serine
C00986  1,3-Diaminopropane
C01005  O-Phospho-L-serine
C01026  N,N-Dimethylglycine
C01102  O-Phospho-L-homoserine
C01242  [Protein]-S8-aminomethyldihydrolipoyllysine
C01888  Aminoacetone
C02051  Lipoylprotein
C02291  L-Cystathionine
C02737  Phosphatidylserine
C02972  Dihydrolipoylprotein
C03082  4-Phospho-L-aspartate
C03194  (R)-1-Aminopropan-2-ol
C03232  3-Phosphonooxypyruvate
C03283  L-2,4-Diaminobutanoate
C03508  L-2-Amino-3-oxobutanoic acid
C05519  L-Allothreonine
C06231  Ectoine
C06442  N(gamma)-Acetyldiaminobutyrate
C16432  5-Hydroxyectoine
C19929  N(alpha)-Acetyl-L-2,4-diaminobutyrate
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
PMID:11823218
  Authors
Kuhlmann AU, Bremer E.
  Title
Osmotically regulated synthesis of the compatible solute ectoine in Bacillus pasteurii and related Bacillus spp.
  Journal
Appl Environ Microbiol 68:772-83 (2002)
DOI:10.1128/AEM.68.2.772-783.2002
Reference
PMID:10473374
  Authors
Canovas D, Borges N, Vargas C, Ventosa A, Nieto JJ, Santos H.
  Title
Role of Ngamma-acetyldiaminobutyrate as an enzyme stabilizer and an intermediate in the biosynthesis of hydroxyectoine.
  Journal
Appl Environ Microbiol 65:3774-9 (1999)
DOI:10.1128/AEM.65.9.3774-3779.1999
Reference
PMID:17636255
  Authors
Bursy J, Pierik AJ, Pica N, Bremer E.
  Title
Osmotically induced synthesis of the compatible solute hydroxyectoine is mediated by an evolutionarily conserved ectoine hydroxylase.
  Journal
J Biol Chem 282:31147-55 (2007)
DOI:10.1074/jbc.M704023200
Reference
PMID:16707670
  Authors
Garcia-Estepa R, Argandona M, Reina-Bueno M, Capote N, Iglesias-Guerra F, Nieto JJ, Vargas C.
  Title
The ectD gene, which is involved in the synthesis of the compatible solute hydroxyectoine, is essential for thermoprotection of the halophilic bacterium Chromohalobacter salexigens.
  Journal
J Bacteriol 188:3774-84 (2006)
DOI:10.1128/JB.00136-06
Reference
PMID:15470257
  Authors
Arevalo-Rodriguez M, Pan X, Boeke JD, Heitman J
  Title
FKBP12 controls aspartate pathway flux in Saccharomyces cerevisiae to prevent toxic intermediate accumulation.
  Journal
Eukaryot Cell 3:1287-96 (2004)
DOI:10.1128/EC.3.5.1287-1296.2004
Reference
PMID:7639721
  Authors
Rees WD, Hay SM
  Title
The biosynthesis of threonine by mammalian cells: expression of a complete bacterial biosynthetic pathway in an animal cell.
  Journal
Biochem J 309 ( Pt 3):999-1007 (1995)
DOI:10.1042/bj3090999
Reference
PMID:11341914
  Authors
Jacques SL, Nieman C, Bareich D, Broadhead G, Kinach R, Honek JF, Wright GD
  Title
Characterization of yeast homoserine dehydrogenase, an antifungal target: the invariant histidine 309 is important for enzyme integrity.
  Journal
Biochim Biophys Acta 1544:28-41 (2001)
DOI:10.1016/S0167-4838(00)00203-X
Reference
PMID:15520012
  Authors
Chen X, Jhee KH, Kruger WD
  Title
Production of the neuromodulator H2S by cystathionine beta-synthase via the condensation of cysteine and homocysteine.
  Journal
J Biol Chem 279:52082-6 (2004)
DOI:10.1074/jbc.C400481200
Related
pathway
skm00010  Glycolysis / Gluconeogenesis
skm00020  Citrate cycle (TCA cycle)
skm00230  Purine metabolism
skm00250  Alanine, aspartate and glutamate metabolism
skm00270  Cysteine and methionine metabolism
skm00290  Valine, leucine and isoleucine biosynthesis
skm00300  Lysine biosynthesis
skm00330  Arginine and proline metabolism
skm00460  Cyanoamino acid metabolism
skm00470  D-Amino acid metabolism
skm00564  Glycerophospholipid metabolism
skm00600  Sphingolipid metabolism
skm00620  Pyruvate metabolism
skm00630  Glyoxylate and dicarboxylate metabolism
skm00640  Propanoate metabolism
skm00680  Methane metabolism
skm00860  Porphyrin metabolism
skm00920  Sulfur metabolism
KO pathway
ko00260   

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