KEGG   PATHWAY: smw00240
Entry
smw00240                    Pathway                                
Name
Pyrimidine metabolism - Serratia marcescens WW4
Class
Metabolism; Nucleotide metabolism
Pathway map
smw00240  Pyrimidine metabolism
smw00240

Module
smw_M00051  De novo pyrimidine biosynthesis, glutamine (+ PRPP) => UMP [PATH:smw00240]
smw_M00052  Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:smw00240]
smw_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:smw00240]
smw_M00938  Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:smw00240]
Other DBs
GO: 0006220 0006213
Organism
Serratia marcescens WW4 [GN:smw]
Gene
SMWW4_v1c02460  udp; uridine phosphorylase [KO:K00757] [EC:2.4.2.3]
SMWW4_v1c03950  cpdB; 2':3'-cyclic-nucleotide 2'-phosphodiesterase [KO:K01119] [EC:3.1.4.16 3.1.3.6]
SMWW4_v1c04710  nrdD; anaerobic ribonucleoside-triphosphate reductase [KO:K21636] [EC:1.1.98.6]
SMWW4_v1c04840  pyrI; aspartate carbamoyltransferase, regulatory subunit [KO:K00610]
SMWW4_v1c04850  pyrB; aspartate carbamoyltransferase, catalytic subunit [KO:K00609] [EC:2.1.3.2]
SMWW4_v1c04990  [KO:K01081] [EC:3.1.3.5]
SMWW4_v1c06530  deoA; thymidine phosphorylase [KO:K00758] [EC:2.4.2.4]
SMWW4_v1c06990  carA; carbamoyl phosphate synthetase small subunit, glutamine amidotransferase [KO:K01956] [EC:6.3.5.5]
SMWW4_v1c07000  carB; carbamoyl-phosphate synthase large subunit [KO:K01955] [EC:6.3.5.5]
SMWW4_v1c07790  mazG; nucleoside triphosphate pyrophosphohydrolase [KO:K04765] [EC:3.6.1.9]
SMWW4_v1c07810  pyrG; CTP synthetase [KO:K01937] [EC:6.3.4.2]
SMWW4_v1c08080  surE; broad specificity 5'(3')-nucleotidase and polyphosphatase [KO:K03787] [EC:3.1.3.5 3.1.3.6]
SMWW4_v1c09890  [KO:K09913] [EC:2.4.2.1 2.4.2.2]
SMWW4_v1c10860  ushA; bifunctional UDP-sugar hydrolase/5'-nucleotidase [KO:K11751] [EC:3.1.3.5 3.6.1.45]
SMWW4_v1c11780  rihA; ribonucleoside hydrolase 1 [KO:K01250] [EC:3.2.2.-]
SMWW4_v1c11920  nagD; UMP phosphatase [KO:K02566] [EC:3.1.3.5]
SMWW4_v1c12350  [KO:K01119] [EC:3.1.4.16 3.1.3.6]
SMWW4_v1c15520  cdd; cytidine/deoxycytidine deaminase [KO:K01489] [EC:3.5.4.5]
SMWW4_v1c15600  udk; uridine/cytidine kinase [KO:K00876] [EC:2.7.1.48]
SMWW4_v1c15610  dcd; 2'-deoxycytidine 5'-triphosphate deaminase [KO:K01494] [EC:3.5.4.13]
SMWW4_v1c16910  cmk; cytidylate kinase [KO:K00945] [EC:2.7.4.25]
SMWW4_v1c17230  pyrD; dihydro-orotate oxidase, FMN-linked [KO:K00254] [EC:1.3.5.2]
SMWW4_v1c18550  pyrC; dihydro-orotase [KO:K01465] [EC:3.5.2.3]
SMWW4_v1c18700  tmk; thymidylate kinase [KO:K00943] [EC:2.7.4.9]
SMWW4_v1c23130  ydfG; NADPH-dependent malonic semialdehyde reductase [KO:K16066] [EC:1.1.1.381 1.1.1.-]
SMWW4_v1c25350  [KO:K06016] [EC:3.5.1.6 3.5.1.87]
SMWW4_v1c26350  pyrF; orotidine-5'-phosphate decarboxylase [KO:K01591] [EC:4.1.1.23]
SMWW4_v1c27180  tdk; thymidine kinase/deoxyuridine kinase [KO:K00857] [EC:2.7.1.21]
SMWW4_v1c27290  nudG; pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase [KO:K08320] [EC:3.6.1.65]
SMWW4_v1c33790  nrdA; ribonucleoside-diphosphate reductase 1 alpha subunit [KO:K00525] [EC:1.17.4.1]
SMWW4_v1c33800  nrdB; ribonucleoside-diphosphate reductase 1 beta subunit [KO:K00526] [EC:1.17.4.1]
SMWW4_v1c34200  yfbR; 5'-nucleotidase [KO:K08722] [EC:3.1.3.89]
SMWW4_v1c36380  upp; uracil phosphoribosyltransferase [KO:K00761] [EC:2.4.2.9]
SMWW4_v1c37220  ndk; multifunctional nucleoside diphosphate kinase and apyrimidinic endonuclease and 3'-phosphodiesterase [KO:K00940] [EC:2.7.4.6]
SMWW4_v1c38470  nrdE; ribonucleoside-diphosphate reductase 2, alpha subunit [KO:K00525] [EC:1.17.4.1]
SMWW4_v1c38480  nrdF; ribonucleoside-diphosphate reductase 2, beta subunit [KO:K00526] [EC:1.17.4.1]
SMWW4_v1c39070  pyrH; uridylate kinase [KO:K09903] [EC:2.7.4.22]
SMWW4_v1c39220  [KO:K06966] [EC:3.2.2.10 3.2.2.-]
SMWW4_v1c39420  thyA; thymidylate synthetase [KO:K00560] [EC:2.1.1.45]
SMWW4_v1c42770  ygjP; putative metal dependent hydrolase [KO:K07043] [EC:3.6.1.-]
SMWW4_v1c43410  [KO:K01465] [EC:3.5.2.3]
SMWW4_v1c43630  rihB; ribonucleoside hydrolase 2 [KO:K25589]
SMWW4_v1c43700  yhdE; Maf-like protein [KO:K06287] [EC:3.6.1.-]
SMWW4_v1c45490  codA; cytosine/isoguanine deaminase [KO:K01485] [EC:3.5.4.1 3.5.4.21]
SMWW4_v1c47760  dut; deoxyuridinetriphosphatase [KO:K01520] [EC:3.6.1.23]
SMWW4_v1c47780  pyrE; orotate phosphoribosyltransferase [KO:K00762] [EC:2.4.2.10]
Compound
C00015  UDP
C00039  DNA
C00046  RNA
C00055  CMP
C00063  CTP
C00064  L-Glutamine
C00075  UTP
C00086  Urea
C00099  beta-Alanine
C00105  UMP
C00106  Uracil
C00112  CDP
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00169  Carbamoyl phosphate
C00178  Thymine
C00214  Thymidine
C00222  3-Oxopropanoate
C00239  dCMP
C00295  Orotate
C00299  Uridine
C00337  (S)-Dihydroorotate
C00363  dTDP
C00364  dTMP
C00365  dUMP
C00380  Cytosine
C00383  Malonate
C00429  5,6-Dihydrouracil
C00438  N-Carbamoyl-L-aspartate
C00458  dCTP
C00459  dTTP
C00460  dUTP
C00475  Cytidine
C00526  Deoxyuridine
C00672  2-Deoxy-D-ribose 1-phosphate
C00705  dCDP
C00813  Barbiturate
C00881  Deoxycytidine
C00941  3',5'-Cyclic CMP
C01013  3-Hydroxypropanoate
C01103  Orotidine 5'-phosphate
C01168  Pseudouridine 5'-phosphate
C01205  (R)-3-Amino-2-methylpropanoate
C01346  dUDP
C01368  3'-UMP
C01563  Carbamate
C02067  Pseudouridine
C02170  Methylmalonate
C02354  2',3'-Cyclic CMP
C02355  2',3'-Cyclic UMP
C02376  5-Methylcytosine
C02642  3-Ureidopropionate
C03997  5-Hydroxymethyldeoxycytidylate
C05281  5-Methylbarbiturate
C05822  3'-CMP
C06198  P1,P4-Bis(5'-uridyl) tetraphosphate
C11038  2'-Deoxy-5-hydroxymethylcytidine-5'-diphosphate
C11039  2'-Deoxy-5-hydroxymethylcytidine-5'-triphosphate
C15607  3-Oxo-3-ureidopropanoate
C20231  (Z)-3-Ureidoacrylate peracid
C20249  (Z)-3-Peroxyaminoacrylate
C20253  Aminoacrylate
C20254  Ureidoacrylate
C20846  3-Oxo-3-ureidoisobutyrate
C21028  (R)-5,6-Dihydrothymine
C21029  (R)-3-Ureidoisobutyrate
C22509  3',5'-Cyclic UMP
Related
pathway
smw00030  Pentose phosphate pathway
smw00220  Arginine biosynthesis
smw00250  Alanine, aspartate and glutamate metabolism
smw00280  Valine, leucine and isoleucine degradation
smw00410  beta-Alanine metabolism
KO pathway
ko00240   

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