KEGG   PATHWAY: spad00020
Entry
spad00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Streptomyces paludis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
spad00020  Citrate cycle (TCA cycle)
spad00020

Module
spad_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:spad00020]
spad_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:spad00020]
spad_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:spad00020]
spad_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:spad00020]
spad_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:spad00020]
Other DBs
GO: 0006099
Organism
Streptomyces paludis [GN:spad]
Gene
DVK44_09870  citrate synthase [KO:K01647] [EC:2.3.3.1]
DVK44_19760  citrate synthase 2 [KO:K01647] [EC:2.3.3.1]
DVK44_26820  helix-turn-helix domain-containing protein [KO:K01647] [EC:2.3.3.1]
DVK44_26825  citrate synthase/methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
DVK44_28315  acnA; aconitate hydratase AcnA [KO:K27802] [EC:4.2.1.3 4.2.1.99]
DVK44_01595  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
DVK44_24070  multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
DVK44_33135  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
DVK44_06845  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
DVK44_12315  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
DVK44_12320  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
DVK44_21495  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
DVK44_21490  ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
DVK44_31740  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
DVK44_21795  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
DVK44_23085  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
DVK44_31745  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
DVK44_21790  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
DVK44_23080  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
DVK44_31735  succinate dehydrogenase [KO:K00241]
DVK44_21805  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
DVK44_21800  succinate dehydrogenase [KO:K00242]
DVK44_22965  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
DVK44_22960  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
DVK44_21545  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
DVK44_22730  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
DVK44_06860  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
DVK44_07925  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
DVK44_06850  sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
spad00010  Glycolysis / Gluconeogenesis
spad00053  Ascorbate and aldarate metabolism
spad00061  Fatty acid biosynthesis
spad00071  Fatty acid degradation
spad00190  Oxidative phosphorylation
spad00220  Arginine biosynthesis
spad00250  Alanine, aspartate and glutamate metabolism
spad00280  Valine, leucine and isoleucine degradation
spad00350  Tyrosine metabolism
spad00470  D-Amino acid metabolism
spad00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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