KEGG   PATHWAY: spu00020
Entry
spu00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Strongylocentrotus purpuratus (purple sea urchin)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
spu00020  Citrate cycle (TCA cycle)
spu00020

Module
spu_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:spu00020]
spu_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:spu00020]
spu_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:spu00020]
spu_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:spu00020]
spu_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:spu00020]
Other DBs
GO: 0006099
Organism
Strongylocentrotus purpuratus (purple sea urchin) [GN:spu]
Gene
590444  citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
587157  ATP-citrate synthase [KO:K01648] [EC:2.3.3.8]
105443595  ATP-citrate synthase isoform X1 [KO:K01648] [EC:2.3.3.8]
594785  ATP-citrate synthase [KO:K01648] [EC:2.3.3.8]
577783  aconitate hydratase, mitochondrial isoform X1 [KO:K01681] [EC:4.2.1.3]
586198  cytoplasmic aconitate hydratase isoform X1 [KO:K01681] [EC:4.2.1.3]
581147  isocitrate dehydrogenase [NADP] cytoplasmic isoform X1 [KO:K00031] [EC:1.1.1.42]
580429  isocitrate dehydrogenase [NADP], mitochondrial [KO:K00031] [EC:1.1.1.42]
587700  probable isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial [KO:K00030] [EC:1.1.1.41]
578131  isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
584151  isocitrate dehydrogenase [NAD] subunit beta, mitochondrial [KO:K00030] [EC:1.1.1.41]
587800  2-oxoglutarate dehydrogenase, mitochondrial isoform X1 [KO:K00164] [EC:1.2.4.2]
576084  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial [KO:K00658] [EC:2.3.1.61]
577103  dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
581456  succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
115924034  succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial-like [KO:K01899] [EC:6.2.1.4 6.2.1.5]
581428  succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
581673  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
580610  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
589263  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [KO:K00235] [EC:1.3.5.1]
115918522  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
577495  succinate dehydrogenase cytochrome b560 subunit, mitochondrial-like [KO:K00236]
588082  succinate dehydrogenase [ubiquinone] cytochrome b small subunit B, mitochondrial [KO:K00237]
577019  uncharacterized protein LOC577019 [KO:K01676] [EC:4.2.1.2]
105447566  uncharacterized protein LOC105447566 [KO:K01676] [EC:4.2.1.2]
580992  fumarate hydratase, mitochondrial [KO:K01679] [EC:4.2.1.2]
591635  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
587163  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
115926793  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
574782  pyruvate carboxylase, mitochondrial isoform X1 [KO:K01958] [EC:6.4.1.1]
752532  phosphoenolpyruvate carboxykinase, cytosolic [GTP] isoform X1 [KO:K01596] [EC:4.1.1.32]
752050  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial [KO:K00161] [EC:1.2.4.1]
100891958  pyruvate dehydrogenase E1 component subunit beta, mitochondrial [KO:K00162] [EC:1.2.4.1]
576867  dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
spu00010  Glycolysis / Gluconeogenesis
spu00053  Ascorbate and aldarate metabolism
spu00061  Fatty acid biosynthesis
spu00062  Fatty acid elongation
spu00071  Fatty acid degradation
spu00190  Oxidative phosphorylation
spu00220  Arginine biosynthesis
spu00250  Alanine, aspartate and glutamate metabolism
spu00280  Valine, leucine and isoleucine degradation
spu00350  Tyrosine metabolism
spu00470  D-Amino acid metabolism
spu00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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