KEGG   PATHWAY: srf00630
Entry
srf00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Sediminicoccus rosea
Class
Metabolism; Carbohydrate metabolism
Pathway map
srf00630  Glyoxylate and dicarboxylate metabolism
srf00630

Module
srf_M00012  Glyoxylate cycle [PATH:srf00630]
srf_M00621  Glycine cleavage system [PATH:srf00630]
Other DBs
GO: 0046487 0043648
Organism
Sediminicoccus rosea [GN:srf]
Gene
LHU95_19670  aceA; isocitrate lyase [KO:K01637] [EC:4.1.3.1 4.1.3.30]
LHU95_04560  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
LHU95_09105  malate synthase G [KO:K01638] [EC:2.3.3.9]
LHU95_20505  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
LHU95_11925  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
LHU95_06415  bifunctional 2-methylcitrate synthase/citrate synthase [KO:K01659] [EC:2.3.3.5]
LHU95_20910  acnA; aconitate hydratase AcnA [KO:K27802] [EC:4.2.1.3 4.2.1.99]
LHU95_21685  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
LHU95_10165  thiolase domain-containing protein [KO:K00626] [EC:2.3.1.9]
LHU95_14435  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
LHU95_22760  phbB; acetoacetyl-CoA reductase [KO:K00023] [EC:1.1.1.36]
LHU95_12040  MaoC family dehydratase [KO:K17865] [EC:4.2.1.55]
LHU95_00335  FAD-binding protein [KO:K00104] [EC:1.1.99.14]
LHU95_00340  FAD-binding protein [KO:K11472] [EC:1.1.99.14]
LHU95_20480  glcF; glycolate oxidase subunit GlcF [KO:K11473] [EC:1.1.99.14]
LHU95_07960  catalase family peroxidase [KO:K03781] [EC:1.11.1.6]
LHU95_01785  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
LHU95_03085  NAD(P)-binding domain-containing protein [KO:K12972] [EC:1.1.1.79 1.1.1.81]
LHU95_08255  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
LHU95_01420  gph; phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
LHU95_14395  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
LHU95_01985  aminotransferase class V-fold PLP-dependent enzyme [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
LHU95_05815  aminotransferase class V-fold PLP-dependent enzyme [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
LHU95_08780  glutamine synthetase family protein [KO:K01915] [EC:6.3.1.2]
LHU95_15880  glnA; type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
LHU95_20420  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
LHU95_19365  gcvP; aminomethyl-transferring glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
LHU95_19355  gcvT; glycine cleavage system aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
LHU95_04320  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
LHU95_09060  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
LHU95_19360  gcvH; glycine cleavage system protein GcvH [KO:K02437]
LHU95_16920  gcl; glyoxylate carboligase [KO:K01608] [EC:4.1.1.47]
LHU95_05810  hydroxypyruvate isomerase family protein [KO:K01816] [EC:5.3.1.22]
LHU95_05805  2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
LHU95_19700  glycerate kinase [KO:K11529] [EC:2.7.1.165]
LHU95_07420  fumarate hydratase [KO:K03779] [EC:4.2.1.32]
LHU95_07415  fumarate hydratase C-terminal domain-containing protein [KO:K03780] [EC:4.2.1.32]
LHU95_19705  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
LHU95_10920  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
LHU95_03705  formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
LHU95_03700  fdh3B; formate dehydrogenase FDH3 subunit beta [KO:K00124]
LHU95_03695  formate dehydrogenase subunit gamma [KO:K00127]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
srf00010  Glycolysis / Gluconeogenesis
srf00020  Citrate cycle (TCA cycle)
srf00030  Pentose phosphate pathway
srf00053  Ascorbate and aldarate metabolism
srf00071  Fatty acid degradation
srf00230  Purine metabolism
srf00250  Alanine, aspartate and glutamate metabolism
srf00260  Glycine, serine and threonine metabolism
srf00620  Pyruvate metabolism
srf00710  Carbon fixation by Calvin cycle
srf00750  Vitamin B6 metabolism
srf00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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