KEGG   PATHWAY: srf00020
Entry
srf00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Sediminicoccus rosea
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
srf00020  Citrate cycle (TCA cycle)
srf00020

Module
srf_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:srf00020]
srf_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:srf00020]
srf_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:srf00020]
srf_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:srf00020]
srf_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:srf00020]
Other DBs
GO: 0006099
Organism
Sediminicoccus rosea [GN:srf]
Gene
LHU95_06415  bifunctional 2-methylcitrate synthase/citrate synthase [KO:K01647] [EC:2.3.3.1]
LHU95_11925  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
LHU95_20910  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
LHU95_22535  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
LHU95_03880  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
LHU95_03885  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
LHU95_04320  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
LHU95_09060  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
LHU95_20490  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
LHU95_20495  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
LHU95_04090  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
LHU95_04095  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
LHU95_04080  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
LHU95_04085  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
LHU95_07410  FAD-binding protein [KO:K00244] [EC:1.3.5.1]
LHU95_07440  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
LHU95_07435  succinate dehydrogenase [KO:K00246]
LHU95_07430  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00247]
LHU95_13010  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
LHU95_13030  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
LHU95_20505  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
LHU95_22450  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
LHU95_06680  transketolase [KO:K00163] [EC:1.2.4.1]
LHU95_09040  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
LHU95_09045  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
LHU95_09050  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
srf00010  Glycolysis / Gluconeogenesis
srf00053  Ascorbate and aldarate metabolism
srf00061  Fatty acid biosynthesis
srf00071  Fatty acid degradation
srf00190  Oxidative phosphorylation
srf00220  Arginine biosynthesis
srf00250  Alanine, aspartate and glutamate metabolism
srf00280  Valine, leucine and isoleucine degradation
srf00350  Tyrosine metabolism
srf00470  D-Amino acid metabolism
srf00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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