KEGG   PATHWAY: ssyi00300
Entry
ssyi00300                   Pathway                                
Name
Lysine biosynthesis - Saccharothrix syringae
Class
Metabolism; Amino acid metabolism
Pathway map
ssyi00300  Lysine biosynthesis
ssyi00300

Module
ssyi_M00016  Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine [PATH:ssyi00300]
Other DBs
GO: 0009085
Organism
Saccharothrix syringae [GN:ssyi]
Gene
EKG83_41120  homoserine dehydrogenase [KO:K00003] [EC:1.1.1.3]
EKG83_17790  aspartate kinase [KO:K00928] [EC:2.7.2.4]
EKG83_16130  aspartate kinase [KO:K00928] [EC:2.7.2.4]
EKG83_01230  aspartate kinase [KO:K00928] [EC:2.7.2.4]
EKG83_16215  aspartate-semialdehyde dehydrogenase [KO:K00133] [EC:1.2.1.11]
EKG83_01235  aspartate-semialdehyde dehydrogenase [KO:K00133] [EC:1.2.1.11]
EKG83_32155  4-hydroxy-tetrahydrodipicolinate synthase [KO:K01714] [EC:4.3.3.7]
EKG83_39000  dapA; 4-hydroxy-tetrahydrodipicolinate synthase [KO:K01714] [EC:4.3.3.7]
EKG83_39080  4-hydroxy-tetrahydrodipicolinate reductase [KO:K00215] [EC:1.17.1.8]
EKG83_21180  hypothetical protein [KO:K00215] [EC:1.17.1.8]
EKG83_04090  dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [KO:K00674] [EC:2.3.1.117]
EKG83_37385  acetylornithine transaminase [KO:K00821] [EC:2.6.1.11 2.6.1.17]
EKG83_44870  dapC; putative succinyldiaminopimelate transaminase DapC [KO:K14267] [EC:2.6.1.17]
EKG83_04095  succinyl-diaminopimelate desuccinylase [KO:K01439] [EC:3.5.1.18]
EKG83_22720  M20 family peptidase [KO:K01439] [EC:3.5.1.18]
EKG83_08380  diaminopimelate epimerase [KO:K01778] [EC:5.1.1.7]
EKG83_31775  diaminopimelate decarboxylase [KO:K01586] [EC:4.1.1.20]
EKG83_41125  lysA; diaminopimelate decarboxylase [KO:K01586] [EC:4.1.1.20]
EKG83_16125  diaminopimelate decarboxylase [KO:K01586] [EC:4.1.1.20]
EKG83_45015  lysA; diaminopimelate decarboxylase [KO:K01586] [EC:4.1.1.20]
EKG83_37595  PLP-dependent aminotransferase family protein [KO:K05825] [EC:2.6.1.-]
EKG83_31225  aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme [KO:K05825] [EC:2.6.1.-]
EKG83_46525  PLP-dependent aminotransferase family protein [KO:K05825] [EC:2.6.1.-]
EKG83_30610  lysX; lysine biosynthesis protein LysX [KO:K05827] [EC:6.3.2.43]
EKG83_30600  [LysW]-aminoadipate kinase [KO:K05828] [EC:2.7.2.17 2.7.2.19]
EKG83_30605  N-acetyl-gamma-glutamyl-phosphate reductase [KO:K05829] [EC:1.2.1.103 1.2.1.106]
EKG83_30595  M20/M25/M40 family metallo-hydrolase [KO:K05831] [EC:3.5.1.130 3.5.1.132]
EKG83_38780  UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [KO:K01928] [EC:6.3.2.13]
EKG83_38775  murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [KO:K01929] [EC:6.3.2.10]
Compound
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00047  L-Lysine
C00049  L-Aspartate
C00263  L-Homoserine
C00322  2-Oxoadipate
C00441  L-Aspartate 4-semialdehyde
C00449  N6-(L-1,3-Dicarboxypropyl)-L-lysine
C00666  LL-2,6-Diaminoheptanedioate
C00680  meso-2,6-Diaminoheptanedioate
C00956  L-2-Aminoadipate
C01251  (R)-2-Hydroxybutane-1,2,4-tricarboxylate
C03082  4-Phospho-L-aspartate
C03871  L-2-Amino-6-oxoheptanedioate
C03972  2,3,4,5-Tetrahydrodipicolinate
C04002  (Z)-But-1-ene-1,2,4-tricarboxylate
C04076  L-2-Aminoadipate 6-semialdehyde
C04390  N6-Acetyl-LL-2,6-diaminoheptanedioate
C04421  N-Succinyl-LL-2,6-diaminoheptanedioate
C04462  N-Succinyl-2-L-amino-6-oxoheptanedioate
C04877  UDP-N-acetylmuramoyl-L-alanyl-gamma-D-glutamyl-meso-2,6-diaminopimelate
C04882  UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-6-carboxy-L-lysyl-D-alanyl-D-alanine
C05535  alpha-Aminoadipoyl-S-acyl enzyme
C05539  N-Acetyl-L-2-amino-6-oxopimelate
C05560  L-2-Aminoadipate adenylate
C05662  Homoisocitrate
C16138  L-Pyrrolysine
C19886  LysW-gamma-L-alpha-aminoadipate
C19887  LysW-gamma-L-alpha-aminoadipyl 6-phosphate
C19888  LysW-gamma-L-alpha-aminoadipate 6-semialdehyde
C19889  LysW-gamma-L-lysine
C20258  (2S,4S)-4-Hydroxy-2,3,4,5-tetrahydrodipicolinate
C20277  (2R,3R)-3-Methylornithine
C20278  (2R,3R)-3-Methylornithinyl-N6-lysine
C20279  (2R,3R)-3-Methylglutamyl-5-semialdehyde-N6-lysine
Reference
PMID:10074354
  Authors
Ledwidge R, Blanchard JS.
  Title
The dual biosynthetic capability of N-acetylornithine aminotransferase in arginine and lysine biosynthesis.
  Journal
Biochemistry 38:3019-3024 (1999)
DOI:10.1021/bi982574a
Reference
PMID:10850974
  Authors
Fuchs TM, Schneider B, Krumbach K, Eggeling L, Gross R.
  Title
Characterization of a bordetella pertussis diaminopimelate (DAP) biosynthesis locus identifies dapC, a novel gene coding for an N-succinyl-L,L-DAP aminotransferase.
  Journal
J Bacteriol 182:3626-3631 (2000)
DOI:10.1128/JB.182.13.3626-3631.2000
Reference
PMID:10714900
  Authors
Zabriskie TM, Jackson MD.
  Title
Lysine biosynthesis and metabolism in fungi.
  Journal
Nat Prod Rep 17:85-97 (2000)
DOI:10.1039/A801345D
Reference
PMID:14627808
  Authors
Rodionov DA, Vitreschak AG, Mironov AA, Gelfand MS.
  Title
Regulation of lysine biosynthesis and transport genes in bacteria: yet another RNA riboswitch?
  Journal
Nucleic Acids Res 31:6748-57 (2003)
DOI:10.1093/nar/gkg900
Reference
PMID:12355264
  Authors
Velasco AM, Leguina JI, Lazcano A.
  Title
Molecular evolution of the lysine biosynthetic pathways.
  Journal
J Mol Evol 55:445-59 (2002)
DOI:10.1007/s00239-002-2340-2
Reference
PMID:15256574
  Authors
Miyazaki T, Miyazaki J, Yamane H, Nishiyama M.
  Title
alpha-Aminoadipate aminotransferase from an extremely thermophilic bacterium, Thermus thermophilus.
  Journal
Microbiology 150:2327-34 (2004)
DOI:10.1099/mic.0.27037-0
Reference
PMID:12126930
  Authors
Goh DL, Patel A, Thomas GH, Salomons GS, Schor DS, Jakobs C, Geraghty MT.
  Title
Characterization of the human gene encoding alpha-aminoadipate aminotransferase (AADAT).
  Journal
Mol Genet Metab 76:172-80 (2002)
DOI:10.1016/S1096-7192(02)00037-9
Reference
PMID:15160885
  Authors
Nishiyama M.
  Title
[Novel lysine biosynthesis: a key to elucidate evolution of metabolic and biosynthetic pathways]
  Journal
Tanpakushitsu Kakusan Koso 49:758-63 (2004)
Reference
PMID:10613839
  Authors
Nishida H, Nishiyama M, Kobashi N, Kosuge T, Hoshino T, Yamane H.
  Title
A prokaryotic gene cluster involved in synthesis of lysine through the amino adipate pathway: a key to the evolution of amino acid biosynthesis.
  Journal
Genome Res 9:1175-83 (1999)
DOI:10.1101/gr.9.12.1175
Reference
PMID:12963379
  Authors
Sakai H, Vassylyeva MN, Matsuura T, Sekine S, Gotoh K, Nishiyama M, Terada T, Shirouzu M, Kuramitsu S, Vassylyev DG, Yokoyama S.
  Title
Crystal structure of a lysine biosynthesis enzyme, LysX, from Thermus thermophilus HB8.
  Journal
J Mol Biol 332:729-40 (2003)
DOI:10.1016/S0022-2836(03)00946-X
Reference
PMID:16361515
  Authors
Hudson AO, Singh BK, Leustek T, Gilvarg C.
  Title
An LL-diaminopimelate aminotransferase defines a novel variant of the lysine biosynthesis pathway in plants.
  Journal
Plant Physiol 140:292-301 (2006)
DOI:10.1104/pp.105.072629
Reference
PMID:19620981
  Authors
Horie A, Tomita T, Saiki A, Kono H, Taka H, Mineki R, Fujimura T, Nishiyama C, Kuzuyama T, Nishiyama M
  Title
Discovery of proteinaceous N-modification in lysine biosynthesis of Thermus thermophilus.
  Journal
Nat Chem Biol 5:673-9 (2009)
DOI:10.1038/nchembio.198
Reference
PMID:21547300
  Authors
Dairi T, Kuzuyama T, Nishiyama M, Fujii I
  Title
Convergent strategies in biosynthesis.
  Journal
Nat Prod Rep 28:1054-86 (2011)
DOI:10.1039/c0np00047g
Reference
PMID:21550296
  Authors
Gaston MA, Jiang R, Krzycki JA
  Title
Functional context, biosynthesis, and genetic encoding of pyrrolysine.
  Journal
Curr Opin Microbiol 14:342-9 (2011)
DOI:10.1016/j.mib.2011.04.001
Related
pathway
ssyi00010  Glycolysis / Gluconeogenesis
ssyi00020  Citrate cycle (TCA cycle)
ssyi00250  Alanine, aspartate and glutamate metabolism
ssyi00260  Glycine, serine and threonine metabolism
ssyi00310  Lysine degradation
ssyi00550  Peptidoglycan biosynthesis
ssyi00620  Pyruvate metabolism
KO pathway
ko00300   
LinkDB

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