KEGG   PATHWAY: stm00020
Entry
stm00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Salmonella enterica subsp. enterica serovar Typhimurium LT2
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
stm00020  Citrate cycle (TCA cycle)
stm00020

Module
stm_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:stm00020]
stm_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:stm00020]
stm_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:stm00020]
stm_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:stm00020]
stm_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:stm00020]
stm_M00982  Methylcitrate cycle [PATH:stm00020]
Other DBs
GO: 0006099
Organism
Salmonella enterica subsp. enterica serovar Typhimurium LT2 [GN:stm]
Gene
STM0152  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
STM0153  aceF; pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
STM0154  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
STM0158  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
STM0369  prpC; 2-methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
STM0730  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
STM0732  sdhC; succinate dehydrogenase, cytochrome b556 [KO:K00241]
STM0733  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
STM0734  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
STM0735  sdhB; succinate dehydrogenase, Fe-S protein [KO:K00240] [EC:1.3.5.1]
STM0736  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
STM0737  sucB; dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
STM0738  sucC; succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
STM0739  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
STM0761  [KO:K01678] [EC:4.2.1.2]
STM0762  [KO:K01677] [EC:4.2.1.2]
STM1238  icdA; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
STM1388  orf70; hypothetical protein [KO:K01675]
STM1468  fumA; fumarate hydratase [KO:K01676] [EC:4.2.1.2]
STM1469  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
STM1651  nifJ; putative pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
STM1712  acnA; aconitate hydratase 1 [KO:K27802]
STM3359  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
STM3500  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
STM4300  fumB; fumarate hydratase [KO:K01676] [EC:4.2.1.2]
STM4340  frdD; fumarate reductase subunit D [KO:K00247]
STM4341  frdC; fumarate reductase subunit C [KO:K00246]
STM4342  frdB; succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
STM4343  frdA; fumarate reductase (quinol) flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
stm00010  Glycolysis / Gluconeogenesis
stm00053  Ascorbate and aldarate metabolism
stm00061  Fatty acid biosynthesis
stm00071  Fatty acid degradation
stm00190  Oxidative phosphorylation
stm00220  Arginine biosynthesis
stm00250  Alanine, aspartate and glutamate metabolism
stm00280  Valine, leucine and isoleucine degradation
stm00350  Tyrosine metabolism
stm00470  D-Amino acid metabolism
stm00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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