KEGG   PATHWAY: sxm00230
Entry
sxm00230                    Pathway                                
Name
Purine metabolism - Shewanella xiamenensis
Class
Metabolism; Nucleotide metabolism
Pathway map
sxm00230  Purine metabolism
sxm00230

Module
sxm_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:sxm00230]
sxm_M00048  De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:sxm00230]
sxm_M00049  Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:sxm00230]
sxm_M00050  Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:sxm00230]
sxm_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:sxm00230]
Other DBs
GO: 0006163 0042278
Organism
Shewanella xiamenensis [GN:sxm]
Gene
MKD32_00510  deoD; purine-nucleoside phosphorylase [KO:K03784] [EC:2.4.2.1]
MKD32_00860  yrfG; GMP/IMP nucleotidase [KO:K20881] [EC:3.1.3.-]
MKD32_00895  nudE; ADP compounds hydrolase NudE [KO:K08312] [EC:3.6.1.-]
MKD32_01555  [KO:K09913] [EC:2.4.2.1 2.4.2.2]
MKD32_02160  [KO:K05851] [EC:4.6.1.1]
MKD32_03110  [KO:K01923] [EC:6.3.2.6]
MKD32_03660  [KO:K01939] [EC:6.3.4.4]
MKD32_03815  nudF; ADP-ribose diphosphatase [KO:K01515] [EC:3.6.1.13 3.6.1.-]
MKD32_03825  cpdA; 3',5'-cyclic-AMP phosphodiesterase [KO:K03651] [EC:3.1.4.53]
MKD32_04030  [KO:K00948] [EC:2.7.6.1]
MKD32_04190  hpt; hypoxanthine phosphoribosyltransferase [KO:K00760] [EC:2.4.2.8]
MKD32_04290  cyaB; class IV adenylate cyclase [KO:K05873] [EC:4.6.1.1]
MKD32_04530  cysD; sulfate adenylyltransferase subunit CysD [KO:K00957] [EC:2.7.7.4]
MKD32_04535  cysN; sulfate adenylyltransferase subunit CysN [KO:K00956] [EC:2.7.7.4]
MKD32_04545  cysC; adenylyl-sulfate kinase [KO:K00860] [EC:2.7.1.25]
MKD32_04805  [KO:K01525] [EC:3.6.1.41]
MKD32_04885  purT; formate-dependent phosphoribosylglycinamide formyltransferase [KO:K08289] [EC:6.3.1.21]
MKD32_05030  pgeF; peptidoglycan editing factor PgeF [KO:K05810] [EC:2.4.2.1 2.4.2.28 3.5.4.4]
MKD32_05060  [KO:K01119] [EC:3.1.4.16 3.1.3.6]
MKD32_05110  purK; 5-(carboxyamino)imidazole ribonucleotide synthase [KO:K01589] [EC:6.3.4.18]
MKD32_05115  purE; 5-(carboxyamino)imidazole ribonucleotide mutase [KO:K01588] [EC:5.4.99.18]
MKD32_05530  relA; GTP diphosphokinase [KO:K00951] [EC:2.7.6.5]
MKD32_05540  mazG; nucleoside triphosphate pyrophosphohydrolase [KO:K04765] [EC:3.6.1.9]
MKD32_05575  surE; 5'/3'-nucleotidase SurE [KO:K03787] [EC:3.1.3.5 3.1.3.6]
MKD32_06185  rdgB; RdgB/HAM1 family non-canonical purine NTP pyrophosphatase [KO:K01519] [EC:3.6.1.66]
MKD32_06360  [KO:K01081] [EC:3.1.3.5]
MKD32_06415  guaB; IMP dehydrogenase [KO:K00088] [EC:1.1.1.205]
MKD32_06420  guaA; glutamine-hydrolyzing GMP synthase [KO:K01951] [EC:6.3.5.2]
MKD32_06435  purL; phosphoribosylformylglycinamidine synthase [KO:K01952] [EC:6.3.5.3]
MKD32_07490  purF; amidophosphoribosyltransferase [KO:K00764] [EC:2.4.2.14]
MKD32_08200  nrdD; anaerobic ribonucleoside-triphosphate reductase [KO:K21636] [EC:1.1.98.6]
MKD32_08485  [KO:K02566] [EC:3.1.3.5]
MKD32_08490  purN; phosphoribosylglycinamide formyltransferase [KO:K11175] [EC:2.1.2.2]
MKD32_08495  purM; phosphoribosylformylglycinamidine cyclo-ligase [KO:K01933] [EC:6.3.3.1]
MKD32_08710  deoD; purine-nucleoside phosphorylase [KO:K03784] [EC:2.4.2.1]
MKD32_08850  purB; adenylosuccinate lyase [KO:K01756] [EC:4.3.2.2]
MKD32_09515  [KO:K01129] [EC:3.1.5.1]
MKD32_09520  yfbR; 5'-deoxynucleotidase [KO:K08722] [EC:3.1.3.89]
MKD32_09815  nrdB; ribonucleotide-diphosphate reductase subunit beta [KO:K00526] [EC:1.17.4.1]
MKD32_09820  nrdA; ribonucleoside-diphosphate reductase subunit alpha [KO:K00525] [EC:1.17.4.1]
MKD32_10435  pgm; phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) [KO:K01835] [EC:5.4.2.2]
MKD32_10900  ndk; nucleoside-diphosphate kinase [KO:K00940] [EC:2.7.4.6]
MKD32_11330  ppx; exopolyphosphatase [KO:K01524] [EC:3.6.1.11 3.6.1.40]
MKD32_11900  [KO:K00892] [EC:2.7.1.73]
MKD32_11910  adk; adenylate kinase [KO:K00939] [EC:2.7.4.3]
MKD32_11940  apt; adenine phosphoribosyltransferase [KO:K00759] [EC:2.4.2.7]
MKD32_11980  ushA; bifunctional UDP-sugar hydrolase/5'-nucleotidase UshA [KO:K11751] [EC:3.1.3.5 3.6.1.45]
MKD32_12060  prs; ribose-phosphate diphosphokinase [KO:K00948] [EC:2.7.6.1]
MKD32_14040  ppnN; nucleotide 5'-monophosphate nucleosidase PpnN [KO:K06966] [EC:3.2.2.10 3.2.2.-]
MKD32_14935  [KO:K01768] [EC:4.6.1.1]
MKD32_15225  [KO:K01939] [EC:6.3.4.4]
MKD32_15380  deoD; purine-nucleoside phosphorylase [KO:K03784] [EC:2.4.2.1]
MKD32_15385  [KO:K01839] [EC:5.4.2.7]
MKD32_16800  yjjX; inosine/xanthosine triphosphatase [KO:K01529]
MKD32_18735  purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase [KO:K00602] [EC:2.1.2.3 3.5.4.10]
MKD32_18740  purD; phosphoribosylamine--glycine ligase [KO:K01945] [EC:6.3.4.13]
MKD32_18885  [KO:K01524] [EC:3.6.1.11 3.6.1.40]
MKD32_19025  gmk; guanylate kinase [KO:K00942] [EC:2.7.4.8]
MKD32_19035  spoT; bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase [KO:K01139] [EC:2.7.6.5 3.1.7.2]
MKD32_20425  add; adenosine deaminase [KO:K01488] [EC:3.5.4.4]
Compound
C00002  ATP
C00008  ADP
C00011  CO2
C00014  Ammonia
C00020  AMP
C00035  GDP
C00037  Glycine
C00039  DNA
C00044  GTP
C00046  RNA
C00048  Glyoxylate
C00053  3'-Phosphoadenylyl sulfate
C00054  Adenosine 3',5'-bisphosphate
C00059  Sulfate
C00064  L-Glutamine
C00081  ITP
C00086  Urea
C00104  IDP
C00117  D-Ribose 5-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00130  IMP
C00131  dATP
C00144  GMP
C00147  Adenine
C00169  Carbamoyl phosphate
C00206  dADP
C00209  Oxalate
C00212  Adenosine
C00224  Adenylyl sulfate
C00242  Guanine
C00262  Hypoxanthine
C00286  dGTP
C00288  HCO3-
C00294  Inosine
C00301  ADP-ribose
C00330  Deoxyguanosine
C00360  dAMP
C00361  dGDP
C00362  dGMP
C00366  Urate
C00385  Xanthine
C00387  Guanosine
C00499  Allantoate
C00559  Deoxyadenosine
C00575  3',5'-Cyclic AMP
C00603  (S)-Ureidoglycolate
C00620  alpha-D-Ribose 1-phosphate
C00655  Xanthosine 5'-phosphate
C00700  XTP
C00802  Oxalureate
C00942  3',5'-Cyclic GMP
C01228  Guanosine 3',5'-bis(diphosphate)
C01260  P1,P4-Bis(5'-adenosyl)tetraphosphate
C01261  P1,P4-Bis(5'-guanosyl) tetraphosphate
C01344  dIDP
C01345  dITP
C01367  3'-AMP
C01444  Oxamate
C01762  Xanthosine
C02091  (S)-Ureidoglycine
C02348  (R)(-)-Allantoin
C02350  (S)-Allantoin
C02353  2',3'-Cyclic AMP
C02718  N-Formiminoglycine
C03090  5-Phosphoribosylamine
C03373  Aminoimidazole ribotide
C03483  Adenosine tetraphosphate
C03614  Inosine 5'-tetraphosphate
C03794  N6-(1,2-Dicarboxyethyl)-AMP
C03838  5'-Phosphoribosylglycinamide
C04051  5-Amino-4-imidazolecarboxyamide
C04376  5'-Phosphoribosyl-N-formylglycinamide
C04392  P1,P4-Bis(5'-xanthosyl) tetraphosphate
C04494  Guanosine 3'-diphosphate 5'-triphosphate
C04640  2-(Formamido)-N1-(5'-phosphoribosyl)acetamidine
C04677  1-(5'-Phosphoribosyl)-5-amino-4-imidazolecarboxamide
C04734  1-(5'-Phosphoribosyl)-5-formamido-4-imidazolecarboxamide
C04751  1-(5-Phospho-D-ribosyl)-5-amino-4-imidazolecarboxylate
C04823  1-(5'-Phosphoribosyl)-5-amino-4-(N-succinocarboxamide)-imidazole
C05239  5-Aminoimidazole
C05512  Deoxyinosine
C05513  Urate-3-ribonucleoside
C05515  5-Ureido-4-imidazole carboxylate
C05516  5-Amino-4-imidazole carboxylate
C05993  Acetyl adenylate
C06193  Guanosine 3'-phosphate
C06194  2',3'-Cyclic GMP
C06195  Imidazolone
C06196  2'-Deoxyinosine 5'-phosphate
C06197  P1,P3-Bis(5'-adenosyl) triphosphate
C06433  5'-Benzoylphosphoadenosine
C06435  5'-Butyrylphosphoinosine
C11821  5-Hydroxyisourate
C12248  5-Hydroxy-2-oxo-4-ureido-2,5-dihydro-1H-imidazole-5-carboxylate
C15667  5-Carboxyamino-1-(5-phospho-D-ribosyl)imidazole
C22395  N6-Succino-2-amino-2'-deoxyadenylate
C22441  dZMP
C22442  dZDP
C22443  dZTP
C22499  8-Hydroxyadenine
C22500  2,8-Dihydroxyadenine
Reference
PMID:10601204
  Authors
Cusa E, Obradors N, Baldoma L, Badia J, Aguilar J.
  Title
Genetic analysis of a chromosomal region containing genes required for assimilation of allantoin nitrogen and linked glyoxylate metabolism in Escherichia coli.
  Journal
J Bacteriol 181:7479-84 (1999)
DOI:10.1128/JB.181.24.7479-7484.1999
Reference
PMID:10986234
  Authors
Xi H, Schneider BL, Reitzer L.
  Title
Purine catabolism in Escherichia coli and function of xanthine dehydrogenase in purine salvage.
  Journal
J Bacteriol 182:5332-41 (2000)
DOI:10.1128/JB.182.19.5332-5341.2000
Related
pathway
sxm00030  Pentose phosphate pathway
sxm00220  Arginine biosynthesis
sxm00250  Alanine, aspartate and glutamate metabolism
sxm00260  Glycine, serine and threonine metabolism
sxm00340  Histidine metabolism
sxm00630  Glyoxylate and dicarboxylate metabolism
sxm00730  Thiamine metabolism
sxm00740  Riboflavin metabolism
sxm00790  Folate biosynthesis
KO pathway
ko00230   

DBGET integrated database retrieval system