KEGG   PATHWAY: sxm00630
Entry
sxm00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Shewanella xiamenensis
Class
Metabolism; Carbohydrate metabolism
Pathway map
sxm00630  Glyoxylate and dicarboxylate metabolism
sxm00630

Module
sxm_M00012  Glyoxylate cycle [PATH:sxm00630]
sxm_M00621  Glycine cleavage system [PATH:sxm00630]
Other DBs
GO: 0046487 0043648
Organism
Shewanella xiamenensis [GN:sxm]
Gene
MKD32_14310  aceA; isocitrate lyase [KO:K01637] [EC:4.1.3.1]
MKD32_08615  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
MKD32_14315  aceB; malate synthase A [KO:K01638] [EC:2.3.3.9]
MKD32_17450  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
MKD32_12350  citrate synthase [KO:K01647] [EC:2.3.3.1]
MKD32_18775  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
MKD32_13500  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
MKD32_04720  katB; catalase KatB [KO:K03781] [EC:1.11.1.6]
MKD32_13090  catalase family peroxidase [KO:K03781] [EC:1.11.1.6]
MKD32_04855  D-2-hydroxyacid dehydrogenase [KO:K00018] [EC:1.1.1.29]
MKD32_01385  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
MKD32_08390  HAD-IA family hydrolase [KO:K01091] [EC:3.1.3.18]
MKD32_02005  alanine--glyoxylate aminotransferase family protein [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
MKD32_01725  glnA; glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
MKD32_15185  glutamine synthetase family protein [KO:K01915] [EC:6.3.1.2]
MKD32_05455  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
MKD32_17395  gcvP; aminomethyl-transferring glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
MKD32_17405  gcvT; glycine cleavage system aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
MKD32_18805  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
MKD32_17400  gcvH; glycine cleavage system protein GcvH [KO:K02437]
MKD32_08450  NAD(P)-dependent oxidoreductase [KO:K00042] [EC:1.1.1.60]
MKD32_13100  glycerate kinase [KO:K00865] [EC:2.7.1.165]
MKD32_09510  bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
MKD32_19370  molybdopterin-dependent oxidoreductase [KO:K00123] [EC:1.17.1.9]
MKD32_19390  molybdopterin-dependent oxidoreductase [KO:K00123] [EC:1.17.1.9]
MKD32_16440  fdhF; formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
MKD32_19375  fdh3B; formate dehydrogenase FDH3 subunit beta [KO:K00124]
MKD32_19395  fdh3B; formate dehydrogenase FDH3 subunit beta [KO:K00124]
MKD32_00545  fdxH; formate dehydrogenase subunit beta [KO:K00124]
MKD32_10150  fdxH; formate dehydrogenase subunit beta [KO:K00124]
MKD32_19260  formate dehydrogenase subunit gamma [KO:K00127]
MKD32_19380  formate dehydrogenase subunit gamma [KO:K00127]
MKD32_19400  formate dehydrogenase subunit gamma [KO:K00127]
MKD32_00550  formate dehydrogenase subunit gamma [KO:K00127]
MKD32_03730  cytochrome b/b6 domain-containing protein [KO:K00127]
MKD32_10155  formate dehydrogenase subunit gamma [KO:K00127]
MKD32_13740  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
sxm00010  Glycolysis / Gluconeogenesis
sxm00020  Citrate cycle (TCA cycle)
sxm00030  Pentose phosphate pathway
sxm00053  Ascorbate and aldarate metabolism
sxm00071  Fatty acid degradation
sxm00230  Purine metabolism
sxm00250  Alanine, aspartate and glutamate metabolism
sxm00260  Glycine, serine and threonine metabolism
sxm00620  Pyruvate metabolism
sxm00710  Carbon fixation by Calvin cycle
sxm00750  Vitamin B6 metabolism
sxm00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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