KEGG   PATHWAY: vfi00230
Entry
vfi00230                    Pathway                                
Name
Purine metabolism - Aliivibrio fischeri ES114
Class
Metabolism; Nucleotide metabolism
Pathway map
vfi00230  Purine metabolism
vfi00230

Module
vfi_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:vfi00230]
vfi_M00048  De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:vfi00230]
vfi_M00049  Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:vfi00230]
vfi_M00050  Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:vfi00230]
vfi_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:vfi00230]
Other DBs
GO: 0006163 0042278
Organism
Aliivibrio fischeri ES114 [GN:vfi]
Gene
VF_2232  nudF; ADP-ribose pyrophosphatase [KO:K01515] [EC:3.6.1.13 3.6.1.-]
VF_2463  nudE; ADP-ribose diphosphatase [KO:K08312] [EC:3.6.1.-]
VF_0506  deoB; phosphopentomutase [KO:K01839] [EC:5.4.2.7]
VF_0816  pgm; phosphoglucomutase [KO:K01835] [EC:5.4.2.2]
VF_0764  prs; phosphoribosylpyrophosphate synthase [KO:K00948] [EC:2.7.6.1]
VF_1691  purF; amidophosphoribosyltransferase [KO:K00764] [EC:2.4.2.14]
VF_2395  purD; phosphoribosylglycinamide synthetase phosphoribosylamine-glycine ligase [KO:K01945] [EC:6.3.4.13]
VF_1929  purN; phosphoribosylglycinamide formyltransferase 1 [KO:K11175] [EC:2.1.2.2]
VF_1487  purT; phosphoribosylglycinamide formyltransferase 2 [KO:K08289] [EC:6.3.1.21]
VF_0652  purL; phosphoribosylformyl-glycineamide synthetase [KO:K01952] [EC:6.3.5.3]
VF_1928  purM; phosphoribosylaminoimidazole synthetase [KO:K01933] [EC:6.3.3.1]
VF_2538  purK; N5-carboxyaminoimidazole ribonucleotide synthase [KO:K01589] [EC:6.3.4.18]
VF_2537  purE; N5-carboxyaminoimidazole ribonucleotide mutase [KO:K01588] [EC:5.4.99.18]
VF_1498  purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [KO:K01923] [EC:6.3.2.6]
VF_1786  purB; adenylosuccinate lyase [KO:K01756] [EC:4.3.2.2]
VF_2394  purH; fused IMP cyclohydrolase/phosphoribosylaminoimidazolecarboxamide formyltransferase [KO:K00602] [EC:2.1.2.3 3.5.4.10]
VF_1688  apt; adenine phosphoribosyltransferase [KO:K00759] [EC:2.4.2.7]
VF_A0396  5'-nucleotidase [KO:K01081] [EC:3.1.3.5]
VF_0778  ushA; bifunctional UDP-sugar hydrolase/5'-nucleotidase [KO:K11751] [EC:3.1.3.5 3.6.1.45]
VF_2070  surE; broad specificity 5'(3')-nucleotidase and polyphosphatase [KO:K03787] [EC:3.1.3.5 3.1.3.6]
VF_0911  gsk; inosine/guanosine kinase [KO:K00892] [EC:2.7.1.73]
VF_A0696  inosine-guanosine kinase [KO:K00892] [EC:2.7.1.73]
VF_A0402  deoD2; purine nucleoside phosphorylase deoD-type 2 [KO:K03784] [EC:2.4.2.1]
VF_0507  deoD; purine-nucleoside phosphorylase [KO:K03784] [EC:2.4.2.1]
VF_A0968  deoD3; purine nucleoside phosphorylase deoD-type; PNP [KO:K03784] [EC:2.4.2.1]
VF_A0554  hypothetical cytosolic protein [KO:K09913] [EC:2.4.2.1 2.4.2.2]
VF_0565  yfiH; conserved protein [KO:K05810] [EC:2.4.2.1 2.4.2.28 3.5.4.4]
VF_2176  hpt; hypoxanthine phosphoribosyltransferase [KO:K00760] [EC:2.4.2.8]
VF_A0019  hypoxanthine-guanine phosphoribosyltransferase [KO:K00760] [EC:2.4.2.8]
VF_0637  guaB; IMP dehydrogenase [KO:K00088] [EC:1.1.1.205]
VF_0625  ndk; multifunctional nucleoside diphosphate kinase and apyrimidinic endonuclease and 3'-phosphodiesterase [KO:K00940] [EC:2.7.4.6]
VF_0560  yjjX; thiamin metabolism associated protein [KO:K01529] [EC:3.6.1.73]
VF_0425  rdgB; dITP/XTP pyrophosphatase [KO:K01519] [EC:3.6.1.66]
VF_0738  gpt; guanine-hypoxanthine phosphoribosyltransferase [KO:K00769] [EC:2.4.2.22]
VF_0638  guaA; GMP synthetase (glutamine aminotransferase) [KO:K01951] [EC:6.3.5.2]
VF_A0695  guaC; GMP reductase [KO:K00364] [EC:1.7.1.7]
VF_A0969  guaD; guanine deaminase [KO:K01487] [EC:3.5.4.3]
VF_0106  gmk; guanylate kinase [KO:K00942] [EC:2.7.4.8]
VF_1202  nrdA; ribonucleoside diphosphate reductase 1, alpha subunit [KO:K00525] [EC:1.17.4.1]
VF_1201  nrdB; ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like protein [KO:K00526] [EC:1.17.4.1]
VF_A0281  nrdD; anaerobic ribonucleoside-triphosphate reductase [KO:K21636] [EC:1.1.98.6]
VF_1682  dgt; deoxyguanosine triphosphate triphosphohydrolase [KO:K01129] [EC:3.1.5.1]
VF_0104  spoT; bifunctional (p)ppGpp synthetase II/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase [KO:K01139] [EC:2.7.6.5 3.1.7.2]
VF_0054  gpp; guanosine pentaphosphatase/exopolyphosphatase [KO:K01524] [EC:3.6.1.11 3.6.1.40]
VF_2080  relA; (p)ppGpp synthetase I/GTP pyrophosphokinase [KO:K00951] [EC:2.7.6.5]
VF_0067  cyaA; adenylate cyclase [KO:K05851] [EC:4.6.1.1]
VF_1256  cpdP; 3',5'-cyclic-nucleotide phosphodiesterase [KO:K01120] [EC:3.1.4.17]
VF_1062  adenylosuccinate synthetase [KO:K01939] [EC:6.3.4.4]
VF_2318  purA; adenylosuccinate synthetase [KO:K01939] [EC:6.3.4.4]
VF_0093  add; adenosine deaminase [KO:K01488] [EC:3.5.4.4]
VF_0595  ygdH; conserved protein [KO:K06966] [EC:3.2.2.10 3.2.2.-]
VF_0319  cpdB; 2':3'-cyclic-nucleotide 2'-phosphodiesterase [KO:K01119] [EC:3.1.4.16 3.1.3.6]
VF_1511  2',3'-cyclic-nucleotide 2'-phosphodiesterase [KO:K01119] [EC:3.1.4.16 3.1.3.6]
VF_0793  adk; adenylate kinase [KO:K00939] [EC:2.7.4.3]
VF_2078  mazG; nucleoside triphosphate pyrophosphohydrolase [KO:K04765] [EC:3.6.1.9]
VF_2230  cpdA; cyclic 3',5'-adenosine monophosphate phosphodiesterase [KO:K03651] [EC:3.1.4.53]
VF_0285  apaH; diadenosine tetraphosphatase [KO:K01525] [EC:3.6.1.41]
VF_0323  cysC; adenosine 5'-phosphosulfate kinase [KO:K00860] [EC:2.7.1.25]
VF_0321  cysN; sulfate adenylyltransferase, subunit 1 [KO:K00956] [EC:2.7.7.4]
VF_0320  cysD; sulfate adenylyltransferase, subunit 2 [KO:K00957] [EC:2.7.7.4]
VF_0673  ureC; Urea amidohydrolase, alpha subunit [KO:K01428] [EC:3.5.1.5]
VF_0674  ureB; urea amidohydrolase, beta subunit [KO:K01429] [EC:3.5.1.5]
VF_0675  ureA; urea amidohydrolase, gamma subunit [KO:K01430] [EC:3.5.1.5]
VF_A1146  ybcF; predicted carbamate kinase [KO:K00926] [EC:2.7.2.2]
Compound
C00002  ATP
C00008  ADP
C00011  CO2
C00014  Ammonia
C00020  AMP
C00035  GDP
C00037  Glycine
C00039  DNA
C00044  GTP
C00046  RNA
C00048  Glyoxylate
C00053  3'-Phosphoadenylyl sulfate
C00054  Adenosine 3',5'-bisphosphate
C00059  Sulfate
C00064  L-Glutamine
C00081  ITP
C00086  Urea
C00104  IDP
C00117  D-Ribose 5-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00130  IMP
C00131  dATP
C00144  GMP
C00147  Adenine
C00169  Carbamoyl phosphate
C00206  dADP
C00209  Oxalate
C00212  Adenosine
C00224  Adenylyl sulfate
C00242  Guanine
C00262  Hypoxanthine
C00286  dGTP
C00288  HCO3-
C00294  Inosine
C00301  ADP-ribose
C00330  Deoxyguanosine
C00360  dAMP
C00361  dGDP
C00362  dGMP
C00366  Urate
C00385  Xanthine
C00387  Guanosine
C00499  Allantoate
C00559  Deoxyadenosine
C00575  3',5'-Cyclic AMP
C00603  (S)-Ureidoglycolate
C00620  alpha-D-Ribose 1-phosphate
C00655  Xanthosine 5'-phosphate
C00700  XTP
C00802  Oxalureate
C00942  3',5'-Cyclic GMP
C01228  Guanosine 3',5'-bis(diphosphate)
C01260  P1,P4-Bis(5'-adenosyl)tetraphosphate
C01261  P1,P4-Bis(5'-guanosyl) tetraphosphate
C01344  dIDP
C01345  dITP
C01367  3'-AMP
C01444  Oxamate
C01762  Xanthosine
C02091  (S)-Ureidoglycine
C02348  (R)(-)-Allantoin
C02350  (S)-Allantoin
C02353  2',3'-Cyclic AMP
C02718  N-Formiminoglycine
C03090  5-Phosphoribosylamine
C03373  Aminoimidazole ribotide
C03483  Adenosine tetraphosphate
C03614  Inosine 5'-tetraphosphate
C03794  N6-(1,2-Dicarboxyethyl)-AMP
C03838  5'-Phosphoribosylglycinamide
C04051  5-Amino-4-imidazolecarboxyamide
C04376  5'-Phosphoribosyl-N-formylglycinamide
C04392  P1,P4-Bis(5'-xanthosyl) tetraphosphate
C04494  Guanosine 3'-diphosphate 5'-triphosphate
C04640  2-(Formamido)-N1-(5'-phosphoribosyl)acetamidine
C04677  1-(5'-Phosphoribosyl)-5-amino-4-imidazolecarboxamide
C04734  1-(5'-Phosphoribosyl)-5-formamido-4-imidazolecarboxamide
C04751  1-(5-Phospho-D-ribosyl)-5-amino-4-imidazolecarboxylate
C04823  1-(5'-Phosphoribosyl)-5-amino-4-(N-succinocarboxamide)-imidazole
C05239  5-Aminoimidazole
C05512  Deoxyinosine
C05513  Urate-3-ribonucleoside
C05515  5-Ureido-4-imidazole carboxylate
C05516  5-Amino-4-imidazole carboxylate
C05993  Acetyl adenylate
C06193  Guanosine 3'-phosphate
C06194  2',3'-Cyclic GMP
C06195  Imidazolone
C06196  2'-Deoxyinosine 5'-phosphate
C06197  P1,P3-Bis(5'-adenosyl) triphosphate
C06433  5'-Benzoylphosphoadenosine
C06435  5'-Butyrylphosphoinosine
C11821  5-Hydroxyisourate
C12248  5-Hydroxy-2-oxo-4-ureido-2,5-dihydro-1H-imidazole-5-carboxylate
C15667  5-Carboxyamino-1-(5-phospho-D-ribosyl)imidazole
C22395  N6-Succino-2-amino-2'-deoxyadenylate
C22441  dZMP
C22442  dZDP
C22443  dZTP
C22499  8-Hydroxyadenine
C22500  2,8-Dihydroxyadenine
Reference
PMID:10601204
  Authors
Cusa E, Obradors N, Baldoma L, Badia J, Aguilar J.
  Title
Genetic analysis of a chromosomal region containing genes required for assimilation of allantoin nitrogen and linked glyoxylate metabolism in Escherichia coli.
  Journal
J Bacteriol 181:7479-84 (1999)
DOI:10.1128/JB.181.24.7479-7484.1999
Reference
PMID:10986234
  Authors
Xi H, Schneider BL, Reitzer L.
  Title
Purine catabolism in Escherichia coli and function of xanthine dehydrogenase in purine salvage.
  Journal
J Bacteriol 182:5332-41 (2000)
DOI:10.1128/JB.182.19.5332-5341.2000
Related
pathway
vfi00030  Pentose phosphate pathway
vfi00220  Arginine biosynthesis
vfi00250  Alanine, aspartate and glutamate metabolism
vfi00260  Glycine, serine and threonine metabolism
vfi00340  Histidine metabolism
vfi00630  Glyoxylate and dicarboxylate metabolism
vfi00730  Thiamine metabolism
vfi00740  Riboflavin metabolism
vfi00790  Folate biosynthesis
KO pathway
ko00230   
LinkDB

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