KEGG   PATHWAY: vhr00230
Entry
vhr00230                    Pathway                                
Name
Purine metabolism - Vibrio harveyi
Class
Metabolism; Nucleotide metabolism
Pathway map
vhr00230  Purine metabolism
vhr00230

Module
vhr_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:vhr00230]
vhr_M00048  De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:vhr00230]
vhr_M00049  Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:vhr00230]
vhr_M00050  Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:vhr00230]
vhr_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:vhr00230]
Other DBs
GO: 0006163 0042278
Organism
Vibrio harveyi [GN:vhr]
Gene
AL538_24740  NUDIX hydrolase [KO:K01515] [EC:3.6.1.13 3.6.1.-]
AL538_11480  ADP-ribose diphosphatase [KO:K01515] [EC:3.6.1.13 3.6.1.-]
AL538_20825  NUDIX hydrolase [KO:K01515] [EC:3.6.1.13 3.6.1.-]
AL538_10315  ADP compounds hydrolase NudE [KO:K08312] [EC:3.6.1.-]
AL538_06065  phosphopentomutase [KO:K01839] [EC:5.4.2.7]
AL538_13715  alpha-D-glucose phosphate-specific phosphoglucomutase [KO:K01835] [EC:5.4.2.2]
AL538_13250  ribose-phosphate pyrophosphokinase [KO:K00948] [EC:2.7.6.1]
AL538_04805  amidophosphoribosyltransferase [KO:K00764] [EC:2.4.2.14]
AL538_08590  phosphoribosylamine--glycine ligase [KO:K01945] [EC:6.3.4.13]
AL538_05310  phosphoribosylglycinamide formyltransferase [KO:K11175] [EC:2.1.2.2]
AL538_02000  formate-dependent phosphoribosylglycinamide formyltransferase [KO:K08289] [EC:6.3.1.21]
AL538_12780  phosphoribosylformylglycinamidine synthase [KO:K01952] [EC:6.3.5.3]
AL538_05305  phosphoribosylformylglycinamidine cyclo-ligase [KO:K01933] [EC:6.3.3.1]
AL538_09430  5-(carboxyamino)imidazole ribonucleotide synthase [KO:K01589] [EC:6.3.4.18]
AL538_09425  purE; 5-(carboxyamino)imidazole ribonucleotide mutase [KO:K01588] [EC:5.4.99.18]
AL538_02215  phosphoribosylaminoimidazolesuccinocarboxamide synthase [KO:K01923] [EC:6.3.2.6]
AL538_15760  adenylosuccinate lyase [KO:K01756] [EC:4.3.2.2]
AL538_08585  purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase [KO:K00602] [EC:2.1.2.3 3.5.4.10]
AL538_04785  adenine phosphoribosyltransferase [KO:K00759] [EC:2.4.2.7]
AL538_24095  bifunctional metallophosphatase/5'-nucleotidase [KO:K01081] [EC:3.1.3.5]
AL538_13295  ushA; bifunctional UDP-sugar hydrolase/5'-nucleotidase [KO:K11751] [EC:3.1.3.5 3.6.1.45]
AL538_16150  ushA; bifunctional UDP-sugar hydrolase/5'-nucleotidase [KO:K11751] [EC:3.1.3.5 3.6.1.45]
AL538_06720  5'/3'-nucleotidase SurE [KO:K03787] [EC:3.1.3.5 3.1.3.6]
AL538_24010  inosine/guanosine kinase [KO:K00892] [EC:2.7.1.73]
AL538_15780  inosine/guanosine kinase [KO:K00892] [EC:2.7.1.73]
AL538_17355  deoD; purine-nucleoside phosphorylase [KO:K03784] [EC:2.4.2.1]
AL538_01765  deoD; purine-nucleoside phosphorylase [KO:K03784] [EC:2.4.2.1]
AL538_06060  deoD; purine-nucleoside phosphorylase [KO:K03784] [EC:2.4.2.1]
AL538_18860  DUF1255 domain-containing protein [KO:K09913] [EC:2.4.2.1 2.4.2.2]
AL538_12120  multi-copper polyphenol oxidoreductase [KO:K05810] [EC:2.4.2.1 2.4.2.28 3.5.4.4]
AL538_06460  hpt; hypoxanthine phosphoribosyltransferase [KO:K00760] [EC:2.4.2.8]
AL538_12445  IMP dehydrogenase [KO:K00088] [EC:1.1.1.205]
AL538_12390  nucleoside-diphosphate kinase [KO:K00940] [EC:2.7.4.6]
AL538_12090  yjjX; non-canonical purine NTP phosphatase [KO:K01529] [EC:3.6.1.73]
AL538_07025  XTP/dITP diphosphatase [KO:K01519] [EC:3.6.1.66]
AL538_12820  oxytetracycline resistance phosphoribosyltransferase domain-containing protein Tet(34) [KO:K00769] [EC:2.4.2.22]
AL538_12450  guaA; GMP synthase (glutamine-hydrolyzing) [KO:K01951] [EC:6.3.5.2]
AL538_26045  GMP reductase [KO:K00364] [EC:1.7.1.7]
AL538_10395  guanylate kinase [KO:K00942] [EC:2.7.4.8]
AL538_18170  ribonucleoside-diphosphate reductase subunit alpha [KO:K00525] [EC:1.17.4.1]
AL538_03240  ribonucleoside-diphosphate reductase subunit alpha [KO:K00525] [EC:1.17.4.1]
AL538_18165  ribonucleoside-diphosphate reductase [KO:K00526] [EC:1.17.4.1]
AL538_03245  ribonucleotide-diphosphate reductase subunit beta [KO:K00526] [EC:1.17.4.1]
AL538_24435  anaerobic ribonucleoside-triphosphate reductase [KO:K21636] [EC:1.1.98.6]
AL538_14290  dGTPase [KO:K01129] [EC:3.1.5.1]
AL538_14295  5'-deoxynucleotidase [KO:K08722] [EC:3.1.3.89]
AL538_10385  bifunctional GTP diphosphokinase/guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [KO:K01139] [EC:2.7.6.5 3.1.7.2]
AL538_09230  guanosine-5'-triphosphate,3'-diphosphate diphosphatase [KO:K01524] [EC:3.6.1.11 3.6.1.40]
AL538_12210  ppx; exopolyphosphatase [KO:K01524] [EC:3.6.1.11 3.6.1.40]
AL538_06760  GTP diphosphokinase [KO:K00951] [EC:2.7.6.5]
AL538_09140  class I adenylate cyclase [KO:K05851] [EC:4.6.1.1]
AL538_01040  CYTH domain-containing protein [KO:K05873] [EC:4.6.1.1]
AL538_21800  adenylosuccinate synthase [KO:K01939] [EC:6.3.4.4]
AL538_08070  adenylosuccinate synthase [KO:K01939] [EC:6.3.4.4]
AL538_10170  adenosine deaminase [KO:K01488] [EC:3.5.4.4]
AL538_12945  LOG family protein [KO:K06966] [EC:3.2.2.10 3.2.2.-]
AL538_26965  adenosine deaminase [KO:K21053] [EC:3.5.4.2]
AL538_10995  cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase [KO:K01119] [EC:3.1.4.16 3.1.3.6]
AL538_12975  bifunctional metallophosphatase/5'-nucleotidase [KO:K01119] [EC:3.1.4.16 3.1.3.6]
AL538_13630  adenylate kinase [KO:K00939] [EC:2.7.4.3]
AL538_06755  nucleoside triphosphate pyrophosphohydrolase [KO:K04765] [EC:3.6.1.9]
AL538_11490  3',5'-cyclic-AMP phosphodiesterase [KO:K03651] [EC:3.1.4.53]
AL538_02050  phosphoesterase [KO:K03651] [EC:3.1.4.53]
AL538_11185  bis(5'-nucleosyl)-tetraphosphatase (symmetrical) [KO:K01525] [EC:3.6.1.41]
AL538_11020  cysC; adenylyl-sulfate kinase [KO:K00860] [EC:2.7.1.25]
AL538_11010  sulfate adenylyltransferase [KO:K00956] [EC:2.7.7.4]
AL538_11005  sulfate adenylyltransferase subunit 2 [KO:K00957] [EC:2.7.7.4]
AL538_15460  Zn-dependent hydrolase [KO:K02083] [EC:3.5.3.9]
AL538_19195  ureC; urease subunit alpha [KO:K01428] [EC:3.5.1.5]
AL538_19200  urease subunit beta [KO:K01429] [EC:3.5.1.5]
AL538_19205  ureA; urease subunit gamma [KO:K01430] [EC:3.5.1.5]
AL538_19745  arcC; carbamate kinase [KO:K00926] [EC:2.7.2.2]
Compound
C00002  ATP
C00008  ADP
C00011  CO2
C00014  Ammonia
C00020  AMP
C00035  GDP
C00037  Glycine
C00039  DNA
C00044  GTP
C00046  RNA
C00048  Glyoxylate
C00053  3'-Phosphoadenylyl sulfate
C00054  Adenosine 3',5'-bisphosphate
C00059  Sulfate
C00064  L-Glutamine
C00081  ITP
C00086  Urea
C00104  IDP
C00117  D-Ribose 5-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00130  IMP
C00131  dATP
C00144  GMP
C00147  Adenine
C00169  Carbamoyl phosphate
C00206  dADP
C00209  Oxalate
C00212  Adenosine
C00224  Adenylyl sulfate
C00242  Guanine
C00262  Hypoxanthine
C00286  dGTP
C00288  HCO3-
C00294  Inosine
C00301  ADP-ribose
C00330  Deoxyguanosine
C00360  dAMP
C00361  dGDP
C00362  dGMP
C00366  Urate
C00385  Xanthine
C00387  Guanosine
C00499  Allantoate
C00559  Deoxyadenosine
C00575  3',5'-Cyclic AMP
C00603  (S)-Ureidoglycolate
C00620  alpha-D-Ribose 1-phosphate
C00655  Xanthosine 5'-phosphate
C00700  XTP
C00802  Oxalureate
C00942  3',5'-Cyclic GMP
C01228  Guanosine 3',5'-bis(diphosphate)
C01260  P1,P4-Bis(5'-adenosyl)tetraphosphate
C01261  P1,P4-Bis(5'-guanosyl) tetraphosphate
C01344  dIDP
C01345  dITP
C01367  3'-AMP
C01444  Oxamate
C01762  Xanthosine
C02091  (S)-Ureidoglycine
C02348  (R)(-)-Allantoin
C02350  (S)-Allantoin
C02353  2',3'-Cyclic AMP
C02718  N-Formiminoglycine
C03090  5-Phosphoribosylamine
C03373  Aminoimidazole ribotide
C03483  Adenosine tetraphosphate
C03614  Inosine 5'-tetraphosphate
C03794  N6-(1,2-Dicarboxyethyl)-AMP
C03838  5'-Phosphoribosylglycinamide
C04051  5-Amino-4-imidazolecarboxyamide
C04376  5'-Phosphoribosyl-N-formylglycinamide
C04392  P1,P4-Bis(5'-xanthosyl) tetraphosphate
C04494  Guanosine 3'-diphosphate 5'-triphosphate
C04640  2-(Formamido)-N1-(5'-phosphoribosyl)acetamidine
C04677  1-(5'-Phosphoribosyl)-5-amino-4-imidazolecarboxamide
C04734  1-(5'-Phosphoribosyl)-5-formamido-4-imidazolecarboxamide
C04751  1-(5-Phospho-D-ribosyl)-5-amino-4-imidazolecarboxylate
C04823  1-(5'-Phosphoribosyl)-5-amino-4-(N-succinocarboxamide)-imidazole
C05239  5-Aminoimidazole
C05512  Deoxyinosine
C05513  Urate-3-ribonucleoside
C05515  5-Ureido-4-imidazole carboxylate
C05516  5-Amino-4-imidazole carboxylate
C05993  Acetyl adenylate
C06193  Guanosine 3'-phosphate
C06194  2',3'-Cyclic GMP
C06195  Imidazolone
C06196  2'-Deoxyinosine 5'-phosphate
C06197  P1,P3-Bis(5'-adenosyl) triphosphate
C06433  5'-Benzoylphosphoadenosine
C06435  5'-Butyrylphosphoinosine
C11821  5-Hydroxyisourate
C12248  5-Hydroxy-2-oxo-4-ureido-2,5-dihydro-1H-imidazole-5-carboxylate
C15667  5-Carboxyamino-1-(5-phospho-D-ribosyl)imidazole
C22395  N6-Succino-2-amino-2'-deoxyadenylate
C22441  dZMP
C22442  dZDP
C22443  dZTP
C22499  8-Hydroxyadenine
C22500  2,8-Dihydroxyadenine
Reference
PMID:10601204
  Authors
Cusa E, Obradors N, Baldoma L, Badia J, Aguilar J.
  Title
Genetic analysis of a chromosomal region containing genes required for assimilation of allantoin nitrogen and linked glyoxylate metabolism in Escherichia coli.
  Journal
J Bacteriol 181:7479-84 (1999)
DOI:10.1128/JB.181.24.7479-7484.1999
Reference
PMID:10986234
  Authors
Xi H, Schneider BL, Reitzer L.
  Title
Purine catabolism in Escherichia coli and function of xanthine dehydrogenase in purine salvage.
  Journal
J Bacteriol 182:5332-41 (2000)
DOI:10.1128/JB.182.19.5332-5341.2000
Related
pathway
vhr00030  Pentose phosphate pathway
vhr00220  Arginine biosynthesis
vhr00250  Alanine, aspartate and glutamate metabolism
vhr00260  Glycine, serine and threonine metabolism
vhr00340  Histidine metabolism
vhr00630  Glyoxylate and dicarboxylate metabolism
vhr00730  Thiamine metabolism
vhr00740  Riboflavin metabolism
vhr00790  Folate biosynthesis
KO pathway
ko00230   
LinkDB

DBGET integrated database retrieval system