KEGG   PATHWAY: vnp00230
Entry
vnp00230                    Pathway                                
Name
Purine metabolism - Vibrio neptunius
Class
Metabolism; Nucleotide metabolism
Pathway map
vnp00230  Purine metabolism
vnp00230

Module
vnp_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:vnp00230]
vnp_M00049  Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:vnp00230]
vnp_M00050  Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:vnp00230]
vnp_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:vnp00230]
vnp_M00958  Adenine ribonucleotide degradation, AMP => Urate [PATH:vnp00230]
vnp_M00959  Guanine ribonucleotide degradation, GMP => Urate [PATH:vnp00230]
Other DBs
GO: 0006163 0042278
Organism
Vibrio neptunius [GN:vnp]
Gene
KW548_00815  purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase [KO:K00602] [EC:2.1.2.3 3.5.4.10]
KW548_00820  purD; phosphoribosylamine--glycine ligase [KO:K01945] [EC:6.3.4.13]
KW548_01470  gmk; guanylate kinase [KO:K00942] [EC:2.7.4.8]
KW548_01480  spoT; bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase [KO:K01139] [EC:2.7.6.5 3.1.7.2]
KW548_01500  nudE; ADP compounds hydrolase NudE [KO:K08312] [EC:3.6.1.-]
KW548_01675  add; adenosine deaminase [KO:K01488] [EC:3.5.4.4]
KW548_01740  purE; 5-(carboxyamino)imidazole ribonucleotide mutase [KO:K01588] [EC:5.4.99.18]
KW548_01745  [KO:K01589] [EC:6.3.4.18]
KW548_02585  gppA; guanosine-5'-triphosphate,3'-diphosphate diphosphatase [KO:K01524] [EC:3.6.1.11 3.6.1.40]
KW548_02690  [KO:K05851] [EC:4.6.1.1]
KW548_03260  arcC; carbamate kinase [KO:K00926] [EC:2.7.2.2]
KW548_03445  [KO:K01939] [EC:6.3.4.4]
KW548_03630  cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase [KO:K01119] [EC:3.1.4.16 3.1.3.6]
KW548_03640  cysD; sulfate adenylyltransferase subunit CysD [KO:K00957] [EC:2.7.7.4]
KW548_03645  cysN; sulfate adenylyltransferase subunit CysN [KO:K00956] [EC:2.7.7.4]
KW548_03955  [KO:K01519] [EC:3.6.1.66]
KW548_04275  surE; 5'/3'-nucleotidase SurE [KO:K03787] [EC:3.1.3.5 3.1.3.6]
KW548_04420  hpt; hypoxanthine phosphoribosyltransferase [KO:K00760] [EC:2.4.2.8]
KW548_04830  nudF; ADP-ribose diphosphatase [KO:K01515] [EC:3.6.1.13 3.6.1.-]
KW548_04840  cpdA; 3',5'-cyclic-AMP phosphodiesterase [KO:K03651] [EC:3.1.4.53]
KW548_05115  [KO:K01839] [EC:5.4.2.7]
KW548_05120  deoD; purine-nucleoside phosphorylase [KO:K03784] [EC:2.4.2.1]
KW548_05305  tet(34); oxytetracycline resistance phosphoribosyltransferase domain-containing protein Tet(34) [KO:K00769] [EC:2.4.2.22]
KW548_05870  adk; adenylate kinase [KO:K00939] [EC:2.7.4.3]
KW548_06375  [KO:K00948] [EC:2.7.6.1]
KW548_06420  ushA; bifunctional UDP-sugar hydrolase/5'-nucleotidase UshA [KO:K11751] [EC:3.1.3.5 3.6.1.45]
KW548_08310  purB; adenylosuccinate lyase [KO:K01756] [EC:4.3.2.2]
KW548_08330  [KO:K00892] [EC:2.7.1.73]
KW548_08720  [KO:K03651] [EC:3.1.4.53]
KW548_09415  nrdB; ribonucleotide-diphosphate reductase subunit beta [KO:K00526] [EC:1.17.4.1]
KW548_09420  nrdA; ribonucleoside-diphosphate reductase subunit alpha [KO:K00525] [EC:1.17.4.1]
KW548_09470  [KO:K01923] [EC:6.3.2.6]
KW548_13425  yfbR; 5'-deoxynucleotidase [KO:K08722] [EC:3.1.3.89]
KW548_13550  [KO:K01129] [EC:3.1.5.1]
KW548_13555  [KO:K21053] [EC:3.5.4.2]
KW548_14020  apt; adenine phosphoribosyltransferase [KO:K00759] [EC:2.4.2.7]
KW548_14245  purF; amidophosphoribosyltransferase [KO:K00764] [EC:2.4.2.14]
KW548_14545  ppnN; nucleotide 5'-monophosphate nucleosidase PpnN [KO:K06966] [EC:3.2.2.10 3.2.2.-]
KW548_14695  pgm; phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) [KO:K01835] [EC:5.4.2.2]
KW548_14805  purN; phosphoribosylglycinamide formyltransferase [KO:K11175] [EC:2.1.2.2]
KW548_14830  purL; phosphoribosylformylglycinamidine synthase [KO:K01952] [EC:6.3.5.3]
KW548_15015  guaA; glutamine-hydrolyzing GMP synthase [KO:K01951] [EC:6.3.5.2]
KW548_15020  guaB; IMP dehydrogenase [KO:K00088] [EC:1.1.1.205]
KW548_15190  ppx; exopolyphosphatase [KO:K01524] [EC:3.6.1.11 3.6.1.40]
KW548_15435  ndk; nucleoside-diphosphate kinase [KO:K00940] [EC:2.7.4.6]
KW548_15535  pgeF; peptidoglycan editing factor PgeF [KO:K05810] [EC:2.4.2.1 2.4.2.28 3.5.4.4]
KW548_15575  yjjX; inosine/xanthosine triphosphatase [KO:K01529]
KW548_15940  mazG; nucleoside triphosphate pyrophosphohydrolase [KO:K04765] [EC:3.6.1.9]
KW548_17270  [KO:K01515] [EC:3.6.1.13 3.6.1.-]
KW548_18380  [KO:K09913] [EC:2.4.2.1 2.4.2.2]
KW548_19295  deoD; purine-nucleoside phosphorylase [KO:K03784] [EC:2.4.2.1]
KW548_20085  xdhA; xanthine dehydrogenase small subunit [KO:K13481] [EC:1.17.1.4]
KW548_20090  xdhB; xanthine dehydrogenase molybdopterin binding subunit [KO:K13482] [EC:1.17.1.4]
KW548_20100  guaD; guanine deaminase [KO:K01487] [EC:3.5.4.3]
KW548_20130  [KO:K01483] [EC:4.3.2.3]
KW548_20135  alc; allantoicase [KO:K01477] [EC:3.5.3.4]
KW548_20140  uraD; 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase [KO:K13485] [EC:4.1.1.97]
KW548_20145  puuE; allantoinase PuuE [KO:K16842] [EC:3.5.2.5]
KW548_20150  uraH; hydroxyisourate hydrolase [KO:K07127] [EC:3.5.2.17]
KW548_22125  [KO:K01951] [EC:6.3.5.2]
KW548_22895  [KO:K01939] [EC:6.3.4.4]
KW548_23270  [KO:K00364] [EC:1.7.1.7]
KW548_23850  nrdD; anaerobic ribonucleoside-triphosphate reductase [KO:K21636] [EC:1.1.98.6]
KW548_24125  [KO:K01081] [EC:3.1.3.5]
KW548_24465  [KO:K00892] [EC:2.7.1.73]
Compound
C00002  ATP
C00008  ADP
C00011  CO2
C00014  Ammonia
C00020  AMP
C00035  GDP
C00037  Glycine
C00039  DNA
C00044  GTP
C00046  RNA
C00048  Glyoxylate
C00053  3'-Phosphoadenylyl sulfate
C00054  Adenosine 3',5'-bisphosphate
C00059  Sulfate
C00064  L-Glutamine
C00081  ITP
C00086  Urea
C00104  IDP
C00117  D-Ribose 5-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00130  IMP
C00131  dATP
C00144  GMP
C00147  Adenine
C00169  Carbamoyl phosphate
C00206  dADP
C00209  Oxalate
C00212  Adenosine
C00224  Adenylyl sulfate
C00242  Guanine
C00262  Hypoxanthine
C00286  dGTP
C00288  HCO3-
C00294  Inosine
C00301  ADP-ribose
C00330  Deoxyguanosine
C00360  dAMP
C00361  dGDP
C00362  dGMP
C00366  Urate
C00385  Xanthine
C00387  Guanosine
C00499  Allantoate
C00559  Deoxyadenosine
C00575  3',5'-Cyclic AMP
C00603  (S)-Ureidoglycolate
C00620  alpha-D-Ribose 1-phosphate
C00655  Xanthosine 5'-phosphate
C00700  XTP
C00802  Oxalureate
C00942  3',5'-Cyclic GMP
C01228  Guanosine 3',5'-bis(diphosphate)
C01260  P1,P4-Bis(5'-adenosyl)tetraphosphate
C01261  P1,P4-Bis(5'-guanosyl) tetraphosphate
C01344  dIDP
C01345  dITP
C01367  3'-AMP
C01444  Oxamate
C01762  Xanthosine
C02091  (S)-Ureidoglycine
C02348  (R)(-)-Allantoin
C02350  (S)-Allantoin
C02353  2',3'-Cyclic AMP
C02718  N-Formiminoglycine
C03090  5-Phosphoribosylamine
C03373  Aminoimidazole ribotide
C03483  Adenosine tetraphosphate
C03614  Inosine 5'-tetraphosphate
C03794  N6-(1,2-Dicarboxyethyl)-AMP
C03838  5'-Phosphoribosylglycinamide
C04051  5-Amino-4-imidazolecarboxyamide
C04376  5'-Phosphoribosyl-N-formylglycinamide
C04392  P1,P4-Bis(5'-xanthosyl) tetraphosphate
C04494  Guanosine 3'-diphosphate 5'-triphosphate
C04640  2-(Formamido)-N1-(5'-phosphoribosyl)acetamidine
C04677  1-(5'-Phosphoribosyl)-5-amino-4-imidazolecarboxamide
C04734  1-(5'-Phosphoribosyl)-5-formamido-4-imidazolecarboxamide
C04751  1-(5-Phospho-D-ribosyl)-5-amino-4-imidazolecarboxylate
C04823  1-(5'-Phosphoribosyl)-5-amino-4-(N-succinocarboxamide)-imidazole
C05239  5-Aminoimidazole
C05512  Deoxyinosine
C05513  Urate-3-ribonucleoside
C05515  5-Ureido-4-imidazole carboxylate
C05516  5-Amino-4-imidazole carboxylate
C05993  Acetyl adenylate
C06193  Guanosine 3'-phosphate
C06194  2',3'-Cyclic GMP
C06195  Imidazolone
C06196  2'-Deoxyinosine 5'-phosphate
C06197  P1,P3-Bis(5'-adenosyl) triphosphate
C06433  5'-Benzoylphosphoadenosine
C06435  5'-Butyrylphosphoinosine
C11821  5-Hydroxyisourate
C12248  5-Hydroxy-2-oxo-4-ureido-2,5-dihydro-1H-imidazole-5-carboxylate
C15667  5-Carboxyamino-1-(5-phospho-D-ribosyl)imidazole
C22395  N6-Succino-2-amino-2'-deoxyadenylate
C22441  dZMP
C22442  dZDP
C22443  dZTP
C22499  8-Hydroxyadenine
C22500  2,8-Dihydroxyadenine
Reference
PMID:10601204
  Authors
Cusa E, Obradors N, Baldoma L, Badia J, Aguilar J.
  Title
Genetic analysis of a chromosomal region containing genes required for assimilation of allantoin nitrogen and linked glyoxylate metabolism in Escherichia coli.
  Journal
J Bacteriol 181:7479-84 (1999)
DOI:10.1128/JB.181.24.7479-7484.1999
Reference
PMID:10986234
  Authors
Xi H, Schneider BL, Reitzer L.
  Title
Purine catabolism in Escherichia coli and function of xanthine dehydrogenase in purine salvage.
  Journal
J Bacteriol 182:5332-41 (2000)
DOI:10.1128/JB.182.19.5332-5341.2000
Related
pathway
vnp00030  Pentose phosphate pathway
vnp00220  Arginine biosynthesis
vnp00250  Alanine, aspartate and glutamate metabolism
vnp00260  Glycine, serine and threonine metabolism
vnp00340  Histidine metabolism
vnp00630  Glyoxylate and dicarboxylate metabolism
vnp00730  Thiamine metabolism
vnp00740  Riboflavin metabolism
vnp00790  Folate biosynthesis
KO pathway
ko00230   

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