KEGG   PATHWAY: xbv00260
Entry
xbv00260                    Pathway                                
Name
Glycine, serine and threonine metabolism - Xenorhabdus bovienii CS03
Description
Serine is derived from 3-phospho-D-glycerate, an intermediate of glycolysis [MD:M00020], and glycine is derived from serine. Threonine is an essential amino acid, which animals cannot synthesize. In bacteria and plants, threonine is derived from aspartate [MD:M00018].
Class
Metabolism; Amino acid metabolism
Pathway map
xbv00260  Glycine, serine and threonine metabolism
xbv00260

Module
xbv_M00018  Threonine biosynthesis, aspartate => homoserine => threonine [PATH:xbv00260]
xbv_M00020  Serine biosynthesis, glycerate-3P => serine [PATH:xbv00260]
xbv_M00338  Cysteine biosynthesis, homocysteine + serine => cysteine [PATH:xbv00260]
xbv_M00555  Betaine biosynthesis, choline => betaine [PATH:xbv00260]
xbv_M00621  Glycine cleavage system [PATH:xbv00260]
Other DBs
GO: 0006544 0006563 0070178 0006566
Organism
Xenorhabdus bovienii CS03 [GN:xbv]
Gene
XBW1_4127  lysC; Lysine-sensitive aspartokinase 3 [KO:K00928] [EC:2.7.2.4]
XBW1_1098  thrA; Bifunctional aspartokinase/homoserine dehydrogenase 1 [Includes: Aspartokinase; Homoserine dehydrogenase] [KO:K12524] [EC:2.7.2.4 1.1.1.3]
XBW1_4628  metL; Bifunctional aspartokinase/homoserine dehydrogenase 2 [Includes: Aspartokinase; Homoserine dehydrogenase] [KO:K12525] [EC:2.7.2.4 1.1.1.3]
XBW1_0012  asd; Aspartate-semialdehyde dehydrogenase [KO:K00133] [EC:1.2.1.11]
XBW1_1097  thrB; Homoserine kinase [KO:K00872] [EC:2.7.1.39]
XBW1_1096  thrC; threonine synthase [KO:K01733] [EC:4.2.3.1]
XBW1_1771  glyA; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
XBW1_1923  ghrA; Glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
XBW1_0475  glxK; Glycerate kinase [KO:K00865] [EC:2.7.1.165]
XBW1_3477  gpmA; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [KO:K01834] [EC:5.4.2.11]
XBW1_1103  gpmB; putative phosphoglycerate mutase gpmB [KO:K15634] [EC:5.4.2.11]
XBW1_3880  serA; D-3-phosphoglycerate dehydrogenase [KO:K00058] [EC:1.1.1.95 1.1.1.399]
XBW1_3326  serC; 3-phosphoserine/phosphohydroxythreonine aminotransferase [KO:K00831] [EC:2.6.1.52]
XBW1_1111  serB; 3-phosphoserine phosphatase [KO:K01079] [EC:3.1.3.3]
XBW1_2076  ydfG; NADP-dependent L-serine/L-allo-threonine dehydrogenase ydfG [KO:K16066] [EC:1.1.1.381 1.1.1.-]
XBW1_4684  kbl; 2-amino-3-ketobutyrate CoA ligase (glycine acetyltransferase) [KO:K00639] [EC:2.3.1.29]
XBW1_4683  tdh; L-threonine 3-dehydrogenase [KO:K00060] [EC:1.1.1.103]
XBW1_3871  gcvP; Glycine dehydrogenase [decarboxylating] [KO:K00281] [EC:1.4.4.2]
XBW1_3873  gcvT; Aminomethyltransferase [KO:K00605] [EC:2.1.2.10]
XBW1_3889  lpdA; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
XBW1_3872  gcvH; Glycine cleavage system H protein [KO:K02437]
XBW1_3292  gatm; Glycine amidinotransferase, mitochondrial [KO:K00613] [EC:2.1.4.1]
XBW1_3617  pssA; CDP-diacylglycerol--serine O-phosphatidyltransferase [KO:K00998] [EC:2.7.8.8]
XBW1_3663  betA; Choline dehydrogenase [KO:K00108] [EC:1.1.99.1]
XBW1_3662  betB; Betaine aldehyde dehydrogenase [KO:K00130] [EC:1.2.1.8]
XBW1_0096  Gamma-aminobutyraldehyde dehydrogenase [KO:K00130] [EC:1.2.1.8]
XBW1_3932  Cysteine synthase [KO:K01697] [EC:4.2.1.22]
XBW1_3931  metC; Cystathionine beta-lyase [KO:K01758] [EC:4.4.1.1]
XBW1_2362  sdaA; L-serine dehydratase 1 [KO:K01752] [EC:4.3.1.17]
XBW1_4546  ilvA; Threonine dehydratase biosynthetic [KO:K01754] [EC:4.3.1.19]
XBW1_2003  trpA; Tryptophan synthase alpha chain [KO:K01695] [EC:4.2.1.20]
XBW1_2004  trpB; Tryptophan synthase beta chain [KO:K01696] [EC:4.2.1.20]
Compound
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00037  Glycine
C00048  Glyoxylate
C00049  L-Aspartate
C00065  L-Serine
C00078  L-Tryptophan
C00097  L-Cysteine
C00101  Tetrahydrofolate
C00109  2-Oxobutanoate
C00114  Choline
C00143  5,10-Methylenetetrahydrofolate
C00168  Hydroxypyruvate
C00188  L-Threonine
C00197  3-Phospho-D-glycerate
C00213  Sarcosine
C00258  D-Glycerate
C00263  L-Homoserine
C00300  Creatine
C00430  5-Aminolevulinate
C00441  L-Aspartate 4-semialdehyde
C00546  Methylglyoxal
C00576  Betaine aldehyde
C00581  Guanidinoacetate
C00631  2-Phospho-D-glycerate
C00719  Betaine
C00740  D-Serine
C00986  1,3-Diaminopropane
C01005  O-Phospho-L-serine
C01026  N,N-Dimethylglycine
C01102  O-Phospho-L-homoserine
C01242  [Protein]-S8-aminomethyldihydrolipoyllysine
C01888  Aminoacetone
C02051  Lipoylprotein
C02291  L-Cystathionine
C02737  Phosphatidylserine
C02972  Dihydrolipoylprotein
C03082  4-Phospho-L-aspartate
C03194  (R)-1-Aminopropan-2-ol
C03232  3-Phosphonooxypyruvate
C03283  L-2,4-Diaminobutanoate
C03508  L-2-Amino-3-oxobutanoic acid
C05519  L-Allothreonine
C06231  Ectoine
C06442  N(gamma)-Acetyldiaminobutyrate
C16432  5-Hydroxyectoine
C19929  N(alpha)-Acetyl-L-2,4-diaminobutyrate
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
PMID:11823218
  Authors
Kuhlmann AU, Bremer E.
  Title
Osmotically regulated synthesis of the compatible solute ectoine in Bacillus pasteurii and related Bacillus spp.
  Journal
Appl Environ Microbiol 68:772-83 (2002)
DOI:10.1128/AEM.68.2.772-783.2002
Reference
PMID:10473374
  Authors
Canovas D, Borges N, Vargas C, Ventosa A, Nieto JJ, Santos H.
  Title
Role of Ngamma-acetyldiaminobutyrate as an enzyme stabilizer and an intermediate in the biosynthesis of hydroxyectoine.
  Journal
Appl Environ Microbiol 65:3774-9 (1999)
DOI:10.1128/AEM.65.9.3774-3779.1999
Reference
PMID:17636255
  Authors
Bursy J, Pierik AJ, Pica N, Bremer E.
  Title
Osmotically induced synthesis of the compatible solute hydroxyectoine is mediated by an evolutionarily conserved ectoine hydroxylase.
  Journal
J Biol Chem 282:31147-55 (2007)
DOI:10.1074/jbc.M704023200
Reference
PMID:16707670
  Authors
Garcia-Estepa R, Argandona M, Reina-Bueno M, Capote N, Iglesias-Guerra F, Nieto JJ, Vargas C.
  Title
The ectD gene, which is involved in the synthesis of the compatible solute hydroxyectoine, is essential for thermoprotection of the halophilic bacterium Chromohalobacter salexigens.
  Journal
J Bacteriol 188:3774-84 (2006)
DOI:10.1128/JB.00136-06
Reference
PMID:15470257
  Authors
Arevalo-Rodriguez M, Pan X, Boeke JD, Heitman J
  Title
FKBP12 controls aspartate pathway flux in Saccharomyces cerevisiae to prevent toxic intermediate accumulation.
  Journal
Eukaryot Cell 3:1287-96 (2004)
DOI:10.1128/EC.3.5.1287-1296.2004
Reference
PMID:7639721
  Authors
Rees WD, Hay SM
  Title
The biosynthesis of threonine by mammalian cells: expression of a complete bacterial biosynthetic pathway in an animal cell.
  Journal
Biochem J 309 ( Pt 3):999-1007 (1995)
DOI:10.1042/bj3090999
Reference
PMID:11341914
  Authors
Jacques SL, Nieman C, Bareich D, Broadhead G, Kinach R, Honek JF, Wright GD
  Title
Characterization of yeast homoserine dehydrogenase, an antifungal target: the invariant histidine 309 is important for enzyme integrity.
  Journal
Biochim Biophys Acta 1544:28-41 (2001)
DOI:10.1016/S0167-4838(00)00203-X
Reference
PMID:15520012
  Authors
Chen X, Jhee KH, Kruger WD
  Title
Production of the neuromodulator H2S by cystathionine beta-synthase via the condensation of cysteine and homocysteine.
  Journal
J Biol Chem 279:52082-6 (2004)
DOI:10.1074/jbc.C400481200
Related
pathway
xbv00010  Glycolysis / Gluconeogenesis
xbv00020  Citrate cycle (TCA cycle)
xbv00230  Purine metabolism
xbv00250  Alanine, aspartate and glutamate metabolism
xbv00270  Cysteine and methionine metabolism
xbv00290  Valine, leucine and isoleucine biosynthesis
xbv00300  Lysine biosynthesis
xbv00330  Arginine and proline metabolism
xbv00460  Cyanoamino acid metabolism
xbv00470  D-Amino acid metabolism
xbv00564  Glycerophospholipid metabolism
xbv00600  Sphingolipid metabolism
xbv00620  Pyruvate metabolism
xbv00630  Glyoxylate and dicarboxylate metabolism
xbv00640  Propanoate metabolism
xbv00680  Methane metabolism
xbv00860  Porphyrin metabolism
xbv00920  Sulfur metabolism
KO pathway
ko00260   
LinkDB

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