KEGG   PATHWAY: xbv00230
Entry
xbv00230                    Pathway                                
Name
Purine metabolism - Xenorhabdus bovienii CS03
Class
Metabolism; Nucleotide metabolism
Pathway map
xbv00230  Purine metabolism
xbv00230

Module
xbv_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:xbv00230]
xbv_M00048  De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:xbv00230]
xbv_M00049  Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:xbv00230]
xbv_M00050  Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:xbv00230]
xbv_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:xbv00230]
Other DBs
GO: 0006163 0042278
Organism
Xenorhabdus bovienii CS03 [GN:xbv]
Gene
XBW1_0676  nudF; ADP-ribose pyrophosphatase [KO:K01515] [EC:3.6.1.13 3.6.1.-]
XBW1_0069  nudE; ADP compounds hydrolase nudE [KO:K08312] [EC:3.6.1.-]
XBW1_1122  deoB; Phosphopentomutase [KO:K01839] [EC:5.4.2.7]
XBW1_3512  pgm; Phosphoglucomutase [KO:K01835] [EC:5.4.2.2]
XBW1_1907  prs; Ribose-phosphate pyrophosphokinase [KO:K00948] [EC:2.7.6.1]
XBW1_3121  purF; Amidophosphoribosyltransferase [KO:K00764] [EC:2.4.2.14]
XBW1_0441  purD; Phosphoribosylamine--glycine ligase [KO:K01945] [EC:6.3.4.13]
XBW1_4008  protein of unknown function [KO:K11175] [EC:2.1.2.2]
XBW1_2404  purN; Phosphoribosylglycinamide formyltransferase [KO:K11175] [EC:2.1.2.2]
XBW1_1760  purL; Phosphoribosylformylglycinamidine synthase [KO:K01952] [EC:6.3.5.3]
XBW1_2403  purM; Phosphoribosylformylglycinamidine cyclo-ligase [KO:K01933] [EC:6.3.3.1]
XBW1_0883  purK; N5-carboxyaminoimidazole ribonucleotide synthase [KO:K01589] [EC:6.3.4.18]
XBW1_0882  purE; N5-carboxyaminoimidazole ribonucleotide mutase [KO:K01588] [EC:5.4.99.18]
XBW1_2392  purC; Phosphoribosylaminoimidazole-succinocarboxamide synthase [KO:K01923] [EC:6.3.2.6]
XBW1_2462  purB; Adenylosuccinate lyase [KO:K01756] [EC:4.3.2.2]
XBW1_0442  purH; Bifunctional purine biosynthesis protein purH [Includes: Phosphoribosylaminoimidazolecarboxamide formyltransferase; IMP cyclohydrolase] [KO:K00602] [EC:2.1.2.3 3.5.4.10]
XBW1_0914  apt; Adenine phosphoribosyltransferase [KO:K00759] [EC:2.4.2.7]
XBW1_0999  putative 5`-nucleotidase family protein [KO:K01081] [EC:3.1.3.5]
XBW1_0901  ushA; Protein UshA [Includes: UDP-sugar hydrolase; 5'-nucleotidase] [KO:K11751] [EC:3.1.3.5 3.6.1.45]
XBW1_4040  surE; Multifunctional protein surE [Includes: 5'/3'-nucleotidase; Exopolyphosphatase] [KO:K03787] [EC:3.1.3.5 3.1.3.6]
XBW1_0904  gsk; Inosine-guanosine kinase [KO:K00892] [EC:2.7.1.73]
XBW1_4302  punA; Purine nucleoside phosphorylase 1 [KO:K03783] [EC:2.4.2.1]
XBW1_1121  deoD; Purine nucleoside phosphorylase deoD-type [KO:K03784] [EC:2.4.2.1]
XBW1_3626  conserved protein of unknown function [KO:K05810] [EC:2.4.2.1 2.4.2.28 3.5.4.4]
XBW1_1138  IUNH; Inosine-uridine preferring nucleoside hydrolase [KO:K25589] [EC:3.2.2.2 3.2.2.3]
XBW1_3994  hpt; Hypoxanthine phosphoribosyltransferase [KO:K00760] [EC:2.4.2.8]
XBW1_2375  guaB; Inosine-5'-monophosphate dehydrogenase [KO:K00088] [EC:1.1.1.205]
XBW1_1790  ndk; Nucleoside diphosphate kinase [KO:K00940] [EC:2.7.4.6]
XBW1_1104  conserved protein of unknown function [KO:K01529] [EC:3.6.1.73]
XBW1_3698  Nucleoside-triphosphatase [KO:K01519] [EC:3.6.1.66]
XBW1_3656  gpt; Xanthine phosphoribosyltransferase [KO:K00769] [EC:2.4.2.22]
XBW1_2374  guaA; GMP synthase [glutamine-hydrolyzing] [KO:K01951] [EC:6.3.5.2]
XBW1_0266  gmk; Guanylate kinase [KO:K00942] [EC:2.7.4.8]
XBW1_2761  nrdA; Ribonucleoside-diphosphate reductase 1 subunit alpha [KO:K00525] [EC:1.17.4.1]
XBW1_2759  nrdB; Ribonucleoside-diphosphate reductase 1 subunit beta [KO:K00526] [EC:1.17.4.1]
XBW1_3962  dgt; Deoxyguanosinetriphosphate triphosphohydrolase [KO:K01129] [EC:3.1.5.1]
XBW1_3154  conserved protein of unknown function [KO:K08722] [EC:3.1.3.89]
XBW1_0268  spoT; Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase [KO:K01139] [EC:2.7.6.5 3.1.7.2]
XBW1_4541  gppA; Guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [KO:K01524] [EC:3.6.1.11 3.6.1.40]
XBW1_2407  ppx; Exopolyphosphatase [KO:K01524] [EC:3.6.1.11 3.6.1.40]
XBW1_3959  relA; GTP pyrophosphokinase [KO:K00951] [EC:2.7.6.5]
XBW1_4515  cya; Adenylate cyclase [KO:K05851] [EC:4.6.1.1]
XBW1_4455  purA; Adenylosuccinate synthetase 2 [KO:K01939] [EC:6.3.4.4]
XBW1_2062  add; Adenosine deaminase [KO:K01488] [EC:3.5.4.4]
XBW1_4188  ygdH; LOG family protein ygdH [KO:K06966] [EC:3.2.2.10 3.2.2.-]
XBW1_1000  cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase [KO:K01119] [EC:3.1.4.16 3.1.3.6]
XBW1_0907  adk; Adenylate kinase [KO:K00939] [EC:2.7.4.3]
XBW1_3958  mazG; Nucleoside triphosphate pyrophosphohydrolase [KO:K04765] [EC:3.6.1.9]
XBW1_3409  conserved protein of unknown function [KO:K03651] [EC:3.1.4.53]
XBW1_0677  icc; Protein icc [KO:K03651] [EC:3.1.4.53]
XBW1_0684  apaH; Bis(5'-nucleosyl)-tetraphosphatase, symmetrical [KO:K01525] [EC:3.6.1.41]
XBW1_4046  cysC; Adenylyl-sulfate kinase [KO:K00860] [EC:2.7.1.25]
XBW1_4047  cysN; Sulfate adenylyltransferase subunit 1 [KO:K00956] [EC:2.7.7.4]
XBW1_4048  cysD; Sulfate adenylyltransferase subunit 2 [KO:K00957] [EC:2.7.7.4]
Compound
C00002  ATP
C00008  ADP
C00011  CO2
C00014  Ammonia
C00020  AMP
C00035  GDP
C00037  Glycine
C00039  DNA
C00044  GTP
C00046  RNA
C00048  Glyoxylate
C00053  3'-Phosphoadenylyl sulfate
C00054  Adenosine 3',5'-bisphosphate
C00059  Sulfate
C00064  L-Glutamine
C00081  ITP
C00086  Urea
C00104  IDP
C00117  D-Ribose 5-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00130  IMP
C00131  dATP
C00144  GMP
C00147  Adenine
C00169  Carbamoyl phosphate
C00206  dADP
C00209  Oxalate
C00212  Adenosine
C00224  Adenylyl sulfate
C00242  Guanine
C00262  Hypoxanthine
C00286  dGTP
C00288  HCO3-
C00294  Inosine
C00301  ADP-ribose
C00330  Deoxyguanosine
C00360  dAMP
C00361  dGDP
C00362  dGMP
C00366  Urate
C00385  Xanthine
C00387  Guanosine
C00499  Allantoate
C00559  Deoxyadenosine
C00575  3',5'-Cyclic AMP
C00603  (S)-Ureidoglycolate
C00620  alpha-D-Ribose 1-phosphate
C00655  Xanthosine 5'-phosphate
C00700  XTP
C00802  Oxalureate
C00942  3',5'-Cyclic GMP
C01228  Guanosine 3',5'-bis(diphosphate)
C01260  P1,P4-Bis(5'-adenosyl)tetraphosphate
C01261  P1,P4-Bis(5'-guanosyl) tetraphosphate
C01344  dIDP
C01345  dITP
C01367  3'-AMP
C01444  Oxamate
C01762  Xanthosine
C02091  (S)-Ureidoglycine
C02348  (R)(-)-Allantoin
C02350  (S)-Allantoin
C02353  2',3'-Cyclic AMP
C02718  N-Formiminoglycine
C03090  5-Phosphoribosylamine
C03373  Aminoimidazole ribotide
C03483  Adenosine tetraphosphate
C03614  Inosine 5'-tetraphosphate
C03794  N6-(1,2-Dicarboxyethyl)-AMP
C03838  5'-Phosphoribosylglycinamide
C04051  5-Amino-4-imidazolecarboxyamide
C04376  5'-Phosphoribosyl-N-formylglycinamide
C04392  P1,P4-Bis(5'-xanthosyl) tetraphosphate
C04494  Guanosine 3'-diphosphate 5'-triphosphate
C04640  2-(Formamido)-N1-(5'-phosphoribosyl)acetamidine
C04677  1-(5'-Phosphoribosyl)-5-amino-4-imidazolecarboxamide
C04734  1-(5'-Phosphoribosyl)-5-formamido-4-imidazolecarboxamide
C04751  1-(5-Phospho-D-ribosyl)-5-amino-4-imidazolecarboxylate
C04823  1-(5'-Phosphoribosyl)-5-amino-4-(N-succinocarboxamide)-imidazole
C05239  5-Aminoimidazole
C05512  Deoxyinosine
C05513  Urate-3-ribonucleoside
C05515  5-Ureido-4-imidazole carboxylate
C05516  5-Amino-4-imidazole carboxylate
C05993  Acetyl adenylate
C06193  Guanosine 3'-phosphate
C06194  2',3'-Cyclic GMP
C06195  Imidazolone
C06196  2'-Deoxyinosine 5'-phosphate
C06197  P1,P3-Bis(5'-adenosyl) triphosphate
C06433  5'-Benzoylphosphoadenosine
C06435  5'-Butyrylphosphoinosine
C11821  5-Hydroxyisourate
C12248  5-Hydroxy-2-oxo-4-ureido-2,5-dihydro-1H-imidazole-5-carboxylate
C15667  5-Carboxyamino-1-(5-phospho-D-ribosyl)imidazole
C22395  N6-Succino-2-amino-2'-deoxyadenylate
C22441  dZMP
C22442  dZDP
C22443  dZTP
C22499  8-Hydroxyadenine
C22500  2,8-Dihydroxyadenine
Reference
PMID:10601204
  Authors
Cusa E, Obradors N, Baldoma L, Badia J, Aguilar J.
  Title
Genetic analysis of a chromosomal region containing genes required for assimilation of allantoin nitrogen and linked glyoxylate metabolism in Escherichia coli.
  Journal
J Bacteriol 181:7479-84 (1999)
DOI:10.1128/JB.181.24.7479-7484.1999
Reference
PMID:10986234
  Authors
Xi H, Schneider BL, Reitzer L.
  Title
Purine catabolism in Escherichia coli and function of xanthine dehydrogenase in purine salvage.
  Journal
J Bacteriol 182:5332-41 (2000)
DOI:10.1128/JB.182.19.5332-5341.2000
Related
pathway
xbv00030  Pentose phosphate pathway
xbv00220  Arginine biosynthesis
xbv00250  Alanine, aspartate and glutamate metabolism
xbv00260  Glycine, serine and threonine metabolism
xbv00340  Histidine metabolism
xbv00630  Glyoxylate and dicarboxylate metabolism
xbv00730  Thiamine metabolism
xbv00740  Riboflavin metabolism
xbv00790  Folate biosynthesis
KO pathway
ko00230   
LinkDB

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