KEGG   PATHWAY: aly00564
Entry
aly00564                    Pathway                                
Name
Glycerophospholipid metabolism - Arabidopsis lyrata (lyrate rockcress)
Class
Metabolism; Lipid metabolism
Pathway map
aly00564  Glycerophospholipid metabolism
aly00564

Module
aly_M00092  Phosphatidylethanolamine (PE) biosynthesis, ethanolamine => PE [PATH:aly00564]
Other DBs
GO: 0006650
Organism
Arabidopsis lyrata (lyrate rockcress) [GN:aly]
Gene
9317848  glycerol-3-phosphate dehydrogenase [NAD(+)] GPDHC1, cytosolic isoform X1 [KO:K00006] [EC:1.1.1.8]
9315952  glycerol-3-phosphate dehydrogenase [NAD(+)] 2, chloroplastic [KO:K00006] [EC:1.1.1.8]
9306762  glycerol-3-phosphate dehydrogenase [NAD(+)] 1, chloroplastic [KO:K00006] [EC:1.1.1.8]
9318611  glycerol-3-phosphate dehydrogenase [NAD(+)] At3g07690, cytosolic [KO:K00006] [EC:1.1.1.8]
9320857  LOW QUALITY PROTEIN: glycerol-3-phosphate dehydrogenase SDP6, mitochondrial [KO:K00111] [EC:1.1.5.3]
9298500  LOW QUALITY PROTEIN: glycerol-3-phosphate dehydrogenase SDP6, mitochondrial [KO:K00111] [EC:1.1.5.3]
9302460  glycerol-3-phosphate acyltransferase 3 [KO:K13506] [EC:2.3.1.15]
9329772  glycerol-3-phosphate acyltransferase, chloroplastic [KO:K00630] [EC:2.3.1.15]
9317630  glycerol-3-phosphate 2-O-acyltransferase 6 [KO:K13508] [EC:2.3.1.15 2.3.1.198]
9318797  glycerol-3-phosphate acyltransferase 5 [KO:K13508] [EC:2.3.1.15 2.3.1.198]
9325425  glycerol-3-phosphate 2-O-acyltransferase 4 [KO:K13508] [EC:2.3.1.15 2.3.1.198]
9325463  probable glycerol-3-phosphate acyltransferase 2 [KO:K13508] [EC:2.3.1.15 2.3.1.198]
9309305  glycerol-3-phosphate acyltransferase 7 [KO:K13508] [EC:2.3.1.15 2.3.1.198]
9308937  probable glycerol-3-phosphate acyltransferase 3 [KO:K13508] [EC:2.3.1.15 2.3.1.198]
9309024  probable glycerol-3-phosphate acyltransferase 8 [KO:K13508] [EC:2.3.1.15 2.3.1.198]
9325673  glycerol-3-phosphate acyltransferase 1 [KO:K13508] [EC:2.3.1.15 2.3.1.198]
9303411  1-acyl-sn-glycerol-3-phosphate acyltransferase 1, chloroplastic isoform X1 [KO:K00655] [EC:2.3.1.51]
9330369  1-acyl-sn-glycerol-3-phosphate acyltransferase 3 [KO:K13523] [EC:2.3.1.51 2.3.1.-]
9314235  1-acyl-sn-glycerol-3-phosphate acyltransferase 2 [KO:K13523] [EC:2.3.1.51 2.3.1.-]
9327689  1-acyl-sn-glycerol-3-phosphate acyltransferase 3 [KO:K13523] [EC:2.3.1.51 2.3.1.-]
9325069  probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 4 [KO:K13513] [EC:2.3.1.- 2.3.1.51]
9319222  probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 5 [KO:K13513] [EC:2.3.1.- 2.3.1.51]
9326015  lysophospholipid acyltransferase 1 [KO:K13519] [EC:2.3.1.51 2.3.1.23 2.3.1.-]
9326007  LOW QUALITY PROTEIN: lysophospholipid acyltransferase 1 [KO:K13519] [EC:2.3.1.51 2.3.1.23 2.3.1.-]
9324046  lysophospholipid acyltransferase 2 [KO:K13519] [EC:2.3.1.51 2.3.1.23 2.3.1.-]
9312468  triacylglycerol lipase SDP1L [KO:K14674] [EC:3.1.1.3 3.1.1.13 3.1.1.4 2.3.1.51]
9309201  triacylglycerol lipase SDP1 [KO:K14674] [EC:3.1.1.3 3.1.1.13 3.1.1.4 2.3.1.51]
9303721  manganese-dependent ADP-ribose/CDP-alcohol diphosphatase [KO:K01517] [EC:3.6.1.13 3.6.1.16 3.6.1.53]
9301550  phosphatidate phosphatase PAH2 isoform X1 [KO:K15728] [EC:3.1.3.4]
9320807  phosphatidate phosphatase PAH1 [KO:K15728] [EC:3.1.3.4]
9318309  putative lipid phosphate phosphatase 3, chloroplastic isoform X1 [KO:K18693] [EC:3.6.1.75 3.1.3.4]
9312803  lipid phosphate phosphatase 1 isoform X1 [KO:K18693] [EC:3.6.1.75 3.1.3.4]
9319186  probable lipid phosphate phosphatase 4 [KO:K18693] [EC:3.6.1.75 3.1.3.4]
9328911  lipid phosphate phosphatase 2 [KO:K18693] [EC:3.6.1.75 3.1.3.4]
9320297  diacylglycerol kinase 5 isoform X1 [KO:K00901] [EC:2.7.1.107]
9302298  diacylglycerol kinase 4 [KO:K00901] [EC:2.7.1.107]
9303426  diacylglycerol kinase 7 [KO:K00901] [EC:2.7.1.107]
9309399  diacylglycerol kinase 1 [KO:K00901] [EC:2.7.1.107]
9303537  diacylglycerol kinase 6 [KO:K00901] [EC:2.7.1.107]
9302648  diacylglycerol kinase 2 [KO:K00901] [EC:2.7.1.107]
9322258  diacylglycerol kinase 3 [KO:K00901] [EC:2.7.1.107]
9320457  non-specific phospholipase C4 [KO:K01114] [EC:3.1.4.3]
9316909  non-specific phospholipase C2 [KO:K01114] [EC:3.1.4.3]
9328451  LOW QUALITY PROTEIN: non-specific phospholipase C1 [KO:K01114] [EC:3.1.4.3]
9313689  non-specific phospholipase C6 isoform X1 [KO:K01114] [EC:3.1.4.3]
9320458  non-specific phospholipase C5 [KO:K01114] [EC:3.1.4.3]
9318496  phospholipase D zeta 2 isoform X1 [KO:K01115] [EC:3.1.4.4]
9303125  phospholipase D delta [KO:K01115] [EC:3.1.4.4]
9321174  phospholipase D alpha 1 [KO:K01115] [EC:3.1.4.4]
9319093  phospholipase D zeta 1 [KO:K01115] [EC:3.1.4.4]
9327881  phospholipase D alpha 4 [KO:K01115] [EC:3.1.4.4]
9309029  phospholipase D beta 2 [KO:K01115] [EC:3.1.4.4]
9317883  phospholipase D beta 1 isoform X2 [KO:K01115] [EC:3.1.4.4]
9310321  phospholipase D alpha 3 [KO:K01115] [EC:3.1.4.4]
9310794  phospholipase D gamma 1 isoform X1 [KO:K01115] [EC:3.1.4.4]
9310795  phospholipase D gamma 1 isoform X1 [KO:K01115] [EC:3.1.4.4]
9327765  phospholipase D alpha 2 [KO:K01115] [EC:3.1.4.4]
9308208  LOW QUALITY PROTEIN: phospholipase D Y [KO:K16860] [EC:3.1.4.4]
9319809  phospholipase A2-alpha [KO:K01047] [EC:3.1.1.4]
9325330  lysophospholipid acyltransferase LPEAT1 isoform X1 [KO:K13510] [EC:2.3.1.23 2.3.1.67]
9318091  lysophospholipid acyltransferase LPEAT2 isoform X1 [KO:K13510] [EC:2.3.1.23 2.3.1.67]
9316206  phospholipase A(1) DAD1, chloroplastic [KO:K16818] [EC:3.1.1.32]
9303989  lecithin-cholesterol acyltransferase-like 4 [KO:K22389] [EC:3.1.1.32]
9320436  phospholipase A(1) LCAT3 isoform X1 [KO:K22389] [EC:3.1.1.32]
9330458  acyl-protein thioesterase 2 [KO:K06130] [EC:3.1.1.5]
9321783  acyl-protein thioesterase 1 [KO:K06130] [EC:3.1.1.5]
9330460  LOW QUALITY PROTEIN: acyl-protein thioesterase 1 [KO:K06130] [EC:3.1.1.5]
9307988  acyl-protein thioesterase 2 [KO:K06130] [EC:3.1.1.5]
9330459  acyl-protein thioesterase 2 [KO:K06130] [EC:3.1.1.5]
9330457  acyl-protein thioesterase 2 [KO:K06130] [EC:3.1.1.5]
9321168  acyl-protein thioesterase 2 [KO:K06130] [EC:3.1.1.5]
9327448  acyl-protein thioesterase 1 [KO:K06130] [EC:3.1.1.5]
110229803  glycerophosphodiester phosphodiesterase GDPD1, chloroplastic [KO:K18696] [EC:3.1.4.46]
9306725  glycerophosphodiester phosphodiesterase GDPD2 [KO:K18696] [EC:3.1.4.46]
9299743  glycerophosphodiester phosphodiesterase GDPD3 isoform X1 [KO:K18696] [EC:3.1.4.46]
9325031  glycerophosphodiester phosphodiesterase GDPD5 [KO:K01126] [EC:3.1.4.46]
9307373  glycerophosphodiester phosphodiesterase GDPD6 [KO:K01126] [EC:3.1.4.46]
9327138  probable choline kinase 3 [KO:K14156] [EC:2.7.1.32 2.7.1.82]
9323447  probable choline kinase 1 [KO:K14156] [EC:2.7.1.32 2.7.1.82]
9325035  probable choline kinase 2 [KO:K14156] [EC:2.7.1.32 2.7.1.82]
9308530  probable choline kinase 3 [KO:K14156] [EC:2.7.1.32 2.7.1.82]
9317286  choline-phosphate cytidylyltransferase 1 [KO:K00968] [EC:2.7.7.15]
9304296  choline-phosphate cytidylyltransferase 2 [KO:K00968] [EC:2.7.7.15]
9298254  choline/ethanolaminephosphotransferase 1 [KO:K00993] [EC:2.7.8.1]
9311330  choline/ethanolaminephosphotransferase 2 [KO:K00993] [EC:2.7.8.1]
9328820  choline/ethanolaminephosphotransferase 1 [KO:K00993] [EC:2.7.8.1]
9327330  LOW QUALITY PROTEIN: serine decarboxylase [KO:K25193] [EC:4.1.1.-]
9315081  probable ethanolamine kinase [KO:K00894] [EC:2.7.1.82]
9315826  ethanolamine-phosphate cytidylyltransferase [KO:K00967] [EC:2.7.7.14]
9324999  phosphoethanolamine N-methyltransferase 3 isoform X1 [KO:K05929] [EC:2.1.1.103]
9319166  phosphoethanolamine N-methyltransferase 1 [KO:K05929] [EC:2.1.1.103]
9327507  phosphomethylethanolamine N-methyltransferase [KO:K05929] [EC:2.1.1.103]
9325335  phosphatidyl-N-methylethanolamine N-methyltransferase [KO:K00550] [EC:2.1.1.71]
9312639  phosphatidate cytidylyltransferase 5, chloroplastic [KO:K00981] [EC:2.7.7.41]
9316228  phosphatidate cytidylyltransferase 4, chloroplastic [KO:K00981] [EC:2.7.7.41]
9324089  phosphatidate cytidylyltransferase 1 [KO:K00981] [EC:2.7.7.41]
9303614  phosphatidate cytidylyltransferase 3 [KO:K00981] [EC:2.7.7.41]
9303847  phosphatidate cytidylyltransferase 2 [KO:K00981] [EC:2.7.7.41]
9328912  CDP-diacylglycerol--serine O-phosphatidyltransferase 1 [KO:K08730] [EC:2.7.8.29]
9302268  phosphatidylserine decarboxylase proenzyme 2 [KO:K01613] [EC:4.1.1.65]
9306209  phosphatidylserine decarboxylase proenzyme 1, mitochondrial [KO:K01613] [EC:4.1.1.65]
9298869  phosphatidylserine decarboxylase proenzyme 2 [KO:K01613] [EC:4.1.1.65]
9305709  phosphatidylserine decarboxylase proenzyme 3 [KO:K01613] [EC:4.1.1.65]
9300580  phosphatidylserine decarboxylase proenzyme 2 [KO:K01613] [EC:4.1.1.65]
9314080  CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 2 [KO:K00995] [EC:2.7.8.5]
9317708  CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 1, chloroplastic [KO:K00995] [EC:2.7.8.5]
9313591  CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 1, chloroplastic [KO:K00995] [EC:2.7.8.5]
9312550  uncharacterized protein LOC9312550 [KO:K01094] [EC:3.1.3.27]
9308785  cardiolipin synthase (CMP-forming), mitochondrial [KO:K08744] [EC:2.7.8.41]
9323817  N-acylphosphatidylethanolamine synthase isoform X1 [KO:K13511] [EC:2.3.1.-]
9318487  tafazzin [KO:K13511] [EC:2.3.1.-]
9324708  CDP-diacylglycerol--inositol 3-phosphatidyltransferase 1 [KO:K00999] [EC:2.7.8.11]
9302882  LOW QUALITY PROTEIN: probable CDP-diacylglycerol--inositol 3-phosphatidyltransferase 2 [KO:K00999] [EC:2.7.8.11]
Compound
C00040  Acyl-CoA
C00065  L-Serine
C00084  Acetaldehyde
C00093  sn-Glycerol 3-phosphate
C00111  Glycerone phosphate
C00114  Choline
C00157  Phosphatidylcholine
C00189  Ethanolamine
C00269  CDP-diacylglycerol
C00307  CDP-choline
C00344  Phosphatidylglycerol
C00346  Ethanolamine phosphate
C00350  Phosphatidylethanolamine
C00416  Phosphatidate
C00513  CDP-glycerol
C00570  CDP-ethanolamine
C00588  Choline phosphate
C00623  sn-Glycerol 1-phosphate
C00641  1,2-Diacyl-sn-glycerol
C00670  sn-Glycero-3-phosphocholine
C00681  1-Acyl-sn-glycerol 3-phosphate
C01194  1-Phosphatidyl-D-myo-inositol
C01210  N-Methylethanolamine phosphate
C01233  sn-Glycero-3-phosphoethanolamine
C01241  Phosphatidyl-N-methylethanolamine
C01996  Acetylcholine
C02737  Phosphatidylserine
C03372  Acylglycerone phosphate
C03819  1-Acylglycerophosphoinositol
C03872  L-Serine-phosphoethanolamine
C03892  Phosphatidylglycerophosphate
C03974  2-Acyl-sn-glycerol 3-phosphate
C04230  1-Acyl-sn-glycero-3-phosphocholine
C04233  2-Acyl-sn-glycero-3-phosphocholine
C04308  Phosphatidyl-N-dimethylethanolamine
C04438  1-Acyl-sn-glycero-3-phosphoethanolamine
C04590  3-(O-Geranylgeranyl)-sn-glycerol 1-phosphate
C04638  2,3-Bis-(O-geranylgeranyl)-sn-glycerol 1-phosphate
C05973  2-Acyl-sn-glycero-3-phosphoethanolamine
C05974  2-Acyl-sn-glycero-3-phosphoserine
C05976  Aminoacyl-phosphatidylglycerol
C05980  Cardiolipin
C06771  Triethanolamine
C06772  Diethanolamine
C13482  Phosphodimethylethanolamine
C18059  CDP-2,3-bis-(O-geranylgeranyl)-sn-glycerol
C18125  1-Acyl-sn-glycero-3-phosphoserine
C18126  1-Acyl-sn-glycero-3-phosphoglycerol
C18129  Monolysocardiolipin
C18168  Diacylglycerylhomoserine
C18169  Diacylglyceryl-N,N,N-trimethylhomoserine
C20466  2,3-Bis-(O-geranylgeranyl)-sn-glycero-1-phospho-L-serine
C20518  2,3-Bis-(O-phytanyl)-sn-glycerol 1-phosphate
C22340  Heptaprenylglyceryl phosphate
C22341  Heptaprenylglycerol
C22342  Diacetylheptaprenylglycerol
Reference
PMID:1512203
  Authors
Racenis PV, Lai JL, Das AK, Mullick PC, Hajra AK, Greenberg ML.
  Title
The acyl dihydroxyacetone phosphate pathway enzymes for glycerolipid biosynthesis are present in the yeast Saccharomyces cerevisiae.
  Journal
J Bacteriol 174:5702-10 (1992)
DOI:10.1128/JB.174.17.5702-5710.1992
Reference
PMID:10092508
  Authors
Taniyama Y, Shibata S, Kita S, Horikoshi K, Fuse H, Shirafuji H, Sumino Y, Fujino M.
  Title
Cloning and expression of a novel lysophospholipase which structurally resembles lecithin cholesterol acyltransferase.
  Journal
Biochem Biophys Res Commun 257:50-6 (1999)
DOI:10.1006/bbrc.1999.0411
Reference
PMID:10542045
  Authors
Athenstaedt K, Daum G.
  Title
Phosphatidic acid, a key intermediate in lipid metabolism.
  Journal
Eur J Biochem 266:1-16 (1999)
DOI:10.1046/j.1432-1327.1999.00822.x
Reference
PMID:12431977
  Authors
Shields DJ, Lehner R, Agellon LB, Vance DE.
  Title
Membrane topography of human phosphatidylethanolamine N-methyltransferase.
  Journal
J Biol Chem 278:2956-62 (2003)
DOI:10.1074/jbc.M210904200
Reference
PMID:14663079
  Authors
Martinez-Morales F, Schobert M, Lopez-Lara IM, Geiger O.
  Title
Pathways for phosphatidylcholine biosynthesis in bacteria.
  Journal
Microbiology 149:3461-71 (2003)
DOI:10.1099/mic.0.26522-0
Reference
PMID:15522832
  Authors
Burgermeister M, Birner-Grunberger R, Nebauer R, Daum G.
  Title
Contribution of different pathways to the supply of phosphatidylethanolamine and phosphatidylcholine to mitochondrial membranes of the yeast Saccharomyces cerevisiae.
  Journal
Biochim Biophys Acta 1686:161-8 (2004)
DOI:10.1016/j.bbalip.2004.09.007
Reference
PMID:1649829
  Authors
Hsu L, Jackowski S, Rock CO
  Title
Isolation and characterization of Escherichia coli K-12 mutants lacking both 2-acyl-glycerophosphoethanolamine acyltransferase and acyl-acyl carrier protein synthetase activity.
  Journal
J Biol Chem 266:13783-8 (1991)
Reference
PMID:10938271
  Authors
Stone SJ, Vance JE.
  Title
Phosphatidylserine synthase-1 and -2 are localized to mitochondria-associated membranes.
  Journal
J Biol Chem 275:34534-40 (2000)
DOI:10.1074/jbc.M002865200
Related
pathway
aly00010  Glycolysis / Gluconeogenesis
aly00260  Glycine, serine and threonine metabolism
aly00561  Glycerolipid metabolism
aly00562  Inositol phosphate metabolism
aly00563  Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
aly00565  Ether lipid metabolism
aly00620  Pyruvate metabolism
KO pathway
ko00564   
LinkDB

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