KEGG   PATHWAY: ko00564
Entry
ko00564                     Pathway                                
Name
Glycerophospholipid metabolism
Class
Metabolism; Lipid metabolism
Pathway map
ko00564  Glycerophospholipid metabolism
ko00564

Module
M00090  Phosphatidylcholine (PC) biosynthesis, choline => PC [PATH:ko00564]
M00091  Phosphatidylcholine (PC) biosynthesis, PE => PC [PATH:ko00564]
M00092  Phosphatidylethanolamine (PE) biosynthesis, ethanolamine => PE [PATH:ko00564]
M00093  Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE [PATH:ko00564]
Other DBs
GO: 0006650
Orthology
K00006  GPD1; glycerol-3-phosphate dehydrogenase (NAD+) [EC:1.1.1.8]
K00057  gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94]
K00096  araM, egsA; glycerol-1-phosphate dehydrogenase [NAD(P)+] [EC:1.1.1.261]
K00105  E1.1.3.21; alpha-glycerophosphate oxidase [EC:1.1.3.21]
K00111  glpA, glpD; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3]
K00112  glpB; glycerol-3-phosphate dehydrogenase subunit B [EC:1.1.5.3]
K00113  glpC; glycerol-3-phosphate dehydrogenase subunit C
K00550  PLMT; phosphatidyl-N-methylethanolamine N-methyltransferase [EC:2.1.1.71]
K00551  PEMT; phosphatidylethanolamine/phosphatidyl-N-methylethanolamine N-methyltransferase [EC:2.1.1.17 2.1.1.71]
K00570  pmtA; phosphatidylethanolamine/phosphatidyl-N-methylethanolamine N-methyltransferase [EC:2.1.1.17 2.1.1.71]
K00623  CHAT; choline O-acetyltransferase [EC:2.3.1.6]
K00629  GPAT1_2; glycerol-3-phosphate O-acyltransferase 1/2 [EC:2.3.1.15]
K00630  ATS1; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15]
K00631  plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15]
K00649  GNPAT; glyceronephosphate O-acyltransferase [EC:2.3.1.42]
K00650  LCAT; lecithin-cholesterol acyltransferase [EC:2.3.1.43]
K00655  plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
K00866  CKI1; choline kinase [EC:2.7.1.32]
K00894  ETNK, EKI; ethanolamine kinase [EC:2.7.1.82]
K00901  dgkA, DGK; diacylglycerol kinase (ATP) [EC:2.7.1.107]
K00967  PCYT2; ethanolamine-phosphate cytidylyltransferase [EC:2.7.7.14]
K00968  PCYT1; choline-phosphate cytidylyltransferase [EC:2.7.7.15]
K00980  tagD; glycerol-3-phosphate cytidylyltransferase [EC:2.7.7.39]
K00981  E2.7.7.41, CDS1, CDS2, cdsA; phosphatidate cytidylyltransferase [EC:2.7.7.41]
K00993  EPT1; ethanolaminephosphotransferase [EC:2.7.8.1]
K00994  CHPT1, CPT1; diacylglycerol cholinephosphotransferase [EC:2.7.8.2]
K00995  PGS1, pgsA; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5]
K00998  pssA; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
K00999  CDIPT; CDP-diacylglycerol--inositol 3-phosphatidyltransferase [EC:2.7.8.11]
K01004  pcs; phosphatidylcholine synthase [EC:2.7.8.24]
K01047  PLA2G, SPLA2; secretory phospholipase A2 [EC:3.1.1.4]
K01048  pldB; lysophospholipase [EC:3.1.1.5]
K01049  ACHE; acetylcholinesterase [EC:3.1.1.7]
K01058  pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
K01080  PLPP1_2_3; phosphatidate phosphatase [EC:3.1.3.4]
K01094  GEP4; phosphatidylglycerophosphatase GEP4 [EC:3.1.3.27]
K01095  pgpA; phosphatidylglycerophosphatase A [EC:3.1.3.27]
K01096  pgpB; phosphatidylglycerophosphatase B [EC:3.1.3.27 3.6.1.75 3.1.3.4 3.6.1.27]
K01114  plc; phospholipase C [EC:3.1.4.3]
K01115  PLD1_2; phospholipase D1/2 [EC:3.1.4.4]
K01126  E3.1.4.46, glpQ, ugpQ; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]
K01517  ADPRM; manganese-dependent ADP-ribose/CDP-alcohol diphosphatase [EC:3.6.1.13 3.6.1.16 3.6.1.53]
K01521  cdh; CDP-diacylglycerol pyrophosphatase [EC:3.6.1.26]
K01613  psd, PISD; phosphatidylserine decarboxylase [EC:4.1.1.65]
K03735  eutB; ethanolamine ammonia-lyase large subunit [EC:4.3.1.7]
K03736  eutC; ethanolamine ammonia-lyase small subunit [EC:4.3.1.7]
K04019  eutA; ethanolamine utilization protein EutA
K04714  SGMS; sphingomyelin synthase / phosphatidylethanolamine phospholipase C [EC:2.7.8.27 3.1.4.62]
K05929  E2.1.1.103, NMT; phosphoethanolamine N-methyltransferase [EC:2.1.1.103]
K05939  aas; acyl-[acyl-carrier-protein]-phospholipid O-acyltransferase / long-chain-fatty-acid--[acyl-carrier-protein] ligase [EC:2.3.1.40 6.2.1.20]
K06123  AYR1; 1-acylglycerone phosphate reductase [EC:1.1.1.101]
K06124  PHOSPHO1; phosphoethanolamine/phosphocholine phosphatase [EC:3.1.3.75]
K06128  LYPLA1; lysophospholipase I [EC:3.1.1.5]
K06129  LYPLA3; lysophospholipase III [EC:3.1.1.5]
K06130  LYPLA2; lysophospholipase II [EC:3.1.1.5]
K06131  clsA_B; cardiolipin synthase A/B [EC:2.7.8.-]
K06132  clsC; cardiolipin synthase C [EC:2.7.8.-]
K06900  capV; cGAMP-activated phospholipase [EC:3.1.1.32 3.1.1.-]
K07029  dagK; diacylglycerol kinase (ATP) [EC:2.7.1.107]
K07094  pcrB; heptaprenylglyceryl phosphate synthase [EC:2.5.1.-]
K08591  plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
K08729  PTDSS1; phosphatidylserine synthase 1 [EC:2.7.8.-]
K08730  PTDSS2; phosphatidylserine synthase 2 [EC:2.7.8.29]
K08744  CRLS; cardiolipin synthase (CMP-forming) [EC:2.7.8.41]
K13333  PLB; lysophospholipase [EC:3.1.1.5]
K13506  GPAT3_4, AGPAT9, AGPAT6; glycerol-3-phosphate O-acyltransferase 3/4 [EC:2.3.1.15]
K13507  GAT; glycerol-3-phosphate O-acyltransferase / dihydroxyacetone phosphate acyltransferase [EC:2.3.1.15 2.3.1.42]
K13508  GPAT; glycerol-3-phosphate acyltransferase [EC:2.3.1.15 2.3.1.198]
K13509  AGPAT1_2; lysophosphatidate acyltransferase [EC:2.3.1.51]
K13510  LPCAT1_2; lysophosphatidylcholine acyltransferase / lyso-PAF acetyltransferase [EC:2.3.1.23 2.3.1.67]
K13511  TAZ; monolysocardiolipin acyltransferase [EC:2.3.1.-]
K13512  LPCAT4, AGPAT7; lysophospholipid acyltransferase [EC:2.3.1.23 2.3.1.-]
K13513  LCLAT1, AGPAT8; lysocardiolipin and lysophospholipid acyltransferase [EC:2.3.1.- 2.3.1.51]
K13514  LPGAT1; lysophosphatidylglycerol acyltransferase 1 [EC:2.3.1.-]
K13515  LPCAT3, MBOAT5; lysophospholipid acyltransferase 5 [EC:2.3.1.23 2.3.1.-]
K13516  MBOAT7; lysophospholipid acyltransferase 7 [EC:2.3.1.-]
K13517  MBOAT1_2; lysophospholipid acyltransferase 1/2 [EC:2.3.1.51 2.3.1.-]
K13519  LPT1, ALE1; lysophospholipid acyltransferase [EC:2.3.1.51 2.3.1.23 2.3.1.-]
K13523  AGPAT3_4; lysophosphatidic acid acyltransferase / lysophosphatidylinositol acyltransferase [EC:2.3.1.51 2.3.1.-]
K13535  CLD1; cardiolipin-specific phospholipase [EC:3.1.1.-]
K13618  PLA1A; phosphatidylserine sn-1 acylhydrolase [EC:3.1.1.111]
K13621  BTA1; betaine lipid synthase
K13622  btaA; S-adenosylmethionine-diacylglycerol 3-amino-3-carboxypropyl transferase
K13623  btaB; S-adenosylmethionine-diacylgycerolhomoserine-N-methlytransferase
K13644  CEPT1; choline/ethanolamine phosphotransferase [EC:2.7.8.1 2.7.8.2]
K14156  CHK; choline/ethanolamine kinase [EC:2.7.1.32 2.7.1.82]
K14286  AGXT2L1, ETNPPL; ethanolamine-phosphate phospho-lyase [EC:4.2.3.2]
K14621  PLB1, PLB; phospholipase B1, membrane-associated [EC:3.1.1.4 3.1.1.5]
K14674  TGL4; TAG lipase / steryl ester hydrolase / phospholipase A2 / LPA acyltransferase [EC:3.1.1.3 3.1.1.13 3.1.1.4 2.3.1.51]
K14676  NTE, NRE; lysophospholipid hydrolase [EC:3.1.1.5]
K15728  LPIN; phosphatidate phosphatase LPIN [EC:3.1.3.4]
K16342  PLA2G4, CPLA2; cytosolic phospholipase A2 [EC:3.1.1.4]
K16343  PLA2G6, IPLA2; calcium-independent phospholipase A2 [EC:3.1.1.4]
K16368  DGK1; diacylglycerol kinase (CTP) [EC:2.7.1.174]
K16369  CHO2; phosphatidylethanolamine N-methyltransferase [EC:2.1.1.17]
K16619  plc, cpa; phospholipase C / alpha-toxin [EC:3.1.4.3]
K16817  PLA2G16; HRAS-like suppressor 3 [EC:3.1.1.32 3.1.1.4]
K16818  DAD1; phospholipase A1 [EC:3.1.1.32]
K16860  PLD3_4; phospholipase D3/4 [EC:3.1.4.4]
K17103  CHO1, pssA; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
K17104  E2.5.1.41; phosphoglycerol geranylgeranyltransferase [EC:2.5.1.41]
K17105  E2.5.1.42; geranylgeranylglycerol-phosphate geranylgeranyltransferase [EC:2.5.1.42]
K17717  pld; phospholipase D [EC:3.1.4.4]
K17830  GGR; digeranylgeranylglycerophospholipid reductase [EC:1.3.1.101 1.3.7.11]
K18693  DPP1, DPPL, PLPP4_5; diacylglycerol diphosphate phosphatase / phosphatidate phosphatase [EC:3.6.1.75 3.1.3.4]
K18694  PGC1; phosphatidylglycerol phospholipase C [EC:3.1.4.-]
K18695  GPCPD1; glycerophosphocholine phosphodiesterase GPCPD1 [EC:3.1.4.2]
K18696  GDE1; glycerophosphodiester phosphodiesterase [EC:3.1.4.46]
K18697  pgpC; phosphatidylglycerophosphatase C [EC:3.1.3.27]
K19007  AGPAT5; lysophosphatidiate acyltransferase [EC:2.3.1.51]
K19664  carS; CDP-2,3-bis-(O-geranylgeranyl)-sn-glycerol synthase [EC:2.7.7.67]
K19665  pssA; archaetidylserine synthase [EC:2.7.8.38]
K22389  LCAT3; phospholipase A1 [EC:3.1.1.32]
K22697  SAMD8; phosphatidylethanolamine phospholipase C [EC:3.1.4.62]
K22831  LOA1; 1-acylglycerol-3-phosphate O-acyltransferase [EC:2.3.1.51]
K24872  yvoF; heptaprenylglycerol acetyltransferase
K25193  SDC; serine decarboxylase
Compound
C00040  Acyl-CoA
C00065  L-Serine
C00084  Acetaldehyde
C00093  sn-Glycerol 3-phosphate
C00111  Glycerone phosphate
C00114  Choline
C00157  Phosphatidylcholine
C00189  Ethanolamine
C00269  CDP-diacylglycerol
C00307  CDP-choline
C00344  Phosphatidylglycerol
C00346  Ethanolamine phosphate
C00350  Phosphatidylethanolamine
C00416  Phosphatidate
C00513  CDP-glycerol
C00570  CDP-ethanolamine
C00588  Choline phosphate
C00623  sn-Glycerol 1-phosphate
C00641  1,2-Diacyl-sn-glycerol
C00670  sn-Glycero-3-phosphocholine
C00681  1-Acyl-sn-glycerol 3-phosphate
C01194  1-Phosphatidyl-D-myo-inositol
C01210  N-Methylethanolamine phosphate
C01233  sn-Glycero-3-phosphoethanolamine
C01241  Phosphatidyl-N-methylethanolamine
C01996  Acetylcholine
C02737  Phosphatidylserine
C03372  Acylglycerone phosphate
C03819  1-Acylglycerophosphoinositol
C03872  L-Serine-phosphoethanolamine
C03892  Phosphatidylglycerophosphate
C03974  2-Acyl-sn-glycerol 3-phosphate
C04230  1-Acyl-sn-glycero-3-phosphocholine
C04233  2-Acyl-sn-glycero-3-phosphocholine
C04308  Phosphatidyl-N-dimethylethanolamine
C04438  1-Acyl-sn-glycero-3-phosphoethanolamine
C04590  3-(O-Geranylgeranyl)-sn-glycerol 1-phosphate
C04638  2,3-Bis-(O-geranylgeranyl)-sn-glycerol 1-phosphate
C05973  2-Acyl-sn-glycero-3-phosphoethanolamine
C05974  2-Acyl-sn-glycero-3-phosphoserine
C05976  Aminoacyl-phosphatidylglycerol
C05980  Cardiolipin
C06771  Triethanolamine
C06772  Diethanolamine
C13482  Phosphodimethylethanolamine
C18059  CDP-2,3-bis-(O-geranylgeranyl)-sn-glycerol
C18125  1-Acyl-sn-glycero-3-phosphoserine
C18126  1-Acyl-sn-glycero-3-phosphoglycerol
C18129  Monolysocardiolipin
C18168  Diacylglycerylhomoserine
C18169  Diacylglyceryl-N,N,N-trimethylhomoserine
C20466  2,3-Bis-(O-geranylgeranyl)-sn-glycero-1-phospho-L-serine
C20518  2,3-Bis-(O-phytanyl)-sn-glycerol 1-phosphate
C22340  Heptaprenylglyceryl phosphate
C22341  Heptaprenylglycerol
C22342  Diacetylheptaprenylglycerol
Reference
PMID:1512203
  Authors
Racenis PV, Lai JL, Das AK, Mullick PC, Hajra AK, Greenberg ML.
  Title
The acyl dihydroxyacetone phosphate pathway enzymes for glycerolipid biosynthesis are present in the yeast Saccharomyces cerevisiae.
  Journal
J Bacteriol 174:5702-10 (1992)
DOI:10.1128/JB.174.17.5702-5710.1992
Reference
  Authors
Taniyama Y, Shibata S, Kita S, Horikoshi K, Fuse H, Shirafuji H, Sumino Y, Fujino M.
  Title
Cloning and expression of a novel lysophospholipase which structurally resembles lecithin cholesterol acyltransferase.
  Journal
Biochem Biophys Res Commun 257:50-6 (1999)
DOI:10.1006/bbrc.1999.0411
Reference
  Authors
Athenstaedt K, Daum G.
  Title
Phosphatidic acid, a key intermediate in lipid metabolism.
  Journal
Eur J Biochem 266:1-16 (1999)
DOI:10.1046/j.1432-1327.1999.00822.x
Reference
  Authors
Shields DJ, Lehner R, Agellon LB, Vance DE.
  Title
Membrane topography of human phosphatidylethanolamine N-methyltransferase.
  Journal
J Biol Chem 278:2956-62 (2003)
DOI:10.1074/jbc.M210904200
Reference
  Authors
Martinez-Morales F, Schobert M, Lopez-Lara IM, Geiger O.
  Title
Pathways for phosphatidylcholine biosynthesis in bacteria.
  Journal
Microbiology 149:3461-71 (2003)
DOI:10.1099/mic.0.26522-0
Reference
  Authors
Burgermeister M, Birner-Grunberger R, Nebauer R, Daum G.
  Title
Contribution of different pathways to the supply of phosphatidylethanolamine and phosphatidylcholine to mitochondrial membranes of the yeast Saccharomyces cerevisiae.
  Journal
Biochim Biophys Acta 1686:161-8 (2004)
DOI:10.1016/j.bbalip.2004.09.007
Reference
PMID:1649829
  Authors
Hsu L, Jackowski S, Rock CO
  Title
Isolation and characterization of Escherichia coli K-12 mutants lacking both 2-acyl-glycerophosphoethanolamine acyltransferase and acyl-acyl carrier protein synthetase activity.
  Journal
J Biol Chem 266:13783-8 (1991)
Reference
  Authors
Stone SJ, Vance JE.
  Title
Phosphatidylserine synthase-1 and -2 are localized to mitochondria-associated membranes.
  Journal
J Biol Chem 275:34534-40 (2000)
DOI:10.1074/jbc.M002865200
Related
pathway
ko00010  Glycolysis / Gluconeogenesis
ko00260  Glycine, serine and threonine metabolism
ko00561  Glycerolipid metabolism
ko00562  Inositol phosphate metabolism
ko00563  Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
ko00565  Ether lipid metabolism
ko00620  Pyruvate metabolism

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